Protein Alignment CG9876 and lin-39

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_001021164.1
• Gene: lin-39 / 176068
• WormBaseID: WBGene00003024
• Length: 253
• Species: Caenorhabditis elegans
• Alignment Length: 215
• Identity: 56/215 - (26%)
• Similarity: 80/215 - (37%)
• Gaps: 65/215 - (30%)

  Fly    12 PVGNPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNIMEMKHDAYSKG 76
            |:....:..|.|:|:.   :.|...:||.:|. :|:::     ||                  ||
 Worm    95 PILGDQSLCYNPSVTS---THHDWKHLEGDDD-DDKDD-----DK------------------KG 132

  Fly    77 KMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHY 141
                 :|.:........|||..|.....:...||   ||..:|.||.::..|:..|||.|....|
 Worm   133 -----ISGDDDDMDKNSGGAVYPWMTRVHSTTGG---SRGEKRQRTAYTRNQVLELEKEFHTHKY 189

  Fly   142 PDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLLDTAPQLVPAPISNNMHKYANM 206
            .....|.|:|..:.|:|.:|::||||||.|                             ||..|.
 Worm   190 LTRKRRIEVAHSLMLTERQVKIWFQNRRMK-----------------------------HKKENK 225

  Fly   207 PHPHPQPPPPPGAYALNFGP 226
            ..|...|..|.|| .|.|||
 Worm   226 DKPMTPPMMPFGA-NLPFGP 244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	22/55 (40%)
lin-39	NP_001021164.1	Homeodomain	166..222	CDD:459649	23/84 (27%)