DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Hoxd3

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:314 Identity:74/314 - (23%)
Similarity:115/314 - (36%) Gaps:96/314 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LNYQQQ--------LHSLPVG---NPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNLD 55
            ||.:||        ..:||..   |||:........|.:.:|..|..: |:......:||.:|  
Mouse   110 LNSEQQPPQPPPPPPPTLPPSSPTNPGSGVPAKKTKGGLSASSSSSTI-SKQIFPWMKESRQN-- 171

  Fly    56 KIHRFSVDNIMEMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRN 120
                              ||.|      ::...:|..|.....|.|.|              :|.
Mouse   172 ------------------SKQK------NSCATSGENCEDKSPPGPAS--------------KRV 198

  Fly   121 RTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLL 185
            ||.::||||..|||.|....|.....|.|:|..::|:|.::::||||||.|:::::::.|   :|
Mouse   199 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKG---IL 260

  Fly   186 DT----APQLVPAPI---------SNNMHKYANMPHPHPQPP----PPPGAYALNFGPLELRSCQ 233
            .:    :|:..| |:         |..:.....:.:..|.||    ..|..|.|......|.||.
Mouse   261 HSPAGQSPERSP-PLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCL 324

  Fly   234 NYTNCY--------------GGFGSSGASGSGVCSFFGATNYCVAANYAKNAYP 273
            .....|              |||.|:...||.|         .|..|:..:..|
Mouse   325 PQQKRYPAPEFEPHPMASNGGGFASANLQGSPV---------YVGGNFVDSMAP 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 24/55 (44%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 24/128 (19%)
Antp-type hexapeptide 161..166 0/4 (0%)
Homeodomain 196..252 CDD:459649 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 5/25 (20%)
DUF4074 370..431 CDD:463833 74/314 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
Blue background indicates that the domain is not in the aligned region.

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