DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Hoxc4

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_038581.2 Gene:Hoxc4 / 15423 MGIID:96195 Length:264 Species:Mus musculus


Alignment Length:244 Identity:59/244 - (24%)
Similarity:94/244 - (38%) Gaps:43/244 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YQQQLHSLPVGNPGNFYYGPTVSGEIYSSHQSHNLE------SEDKLEDREESGRNLDKIHRFSV 62
            |.|..: :|..:|.  |||.|..    |..|.|:.|      ......:|:.|..:|........
Mouse    23 YSQNSY-IPEHSPE--YYGRTRE----SGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRA 80

  Fly    63 DNIMEMKHDAYSKGKMAME------LSSNFGPTGAGCG--GADRPAPCSGNLP------------ 107
            ....:..|....|.:...|      .|::..|....|.  ..|.|:..:...|            
Mouse    81 HGPAQAGHHHPEKSQPLCEPAPLSGTSASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVS 145

  Fly   108 -AGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAK 171
             ....::..:|:|:||.::..|:..|||.|....|.....|.|:|..:.|||.::::||||||.|
Mouse   146 TVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210

  Fly   172 FRRNERSVGSRTLLDTAPQLVPAPISNNMHKYANMP---HPHPQPPPPP 217
            ::::.|.  ..|.:.:||....||.:.:    |..|   ..|.|...||
Mouse   211 WKKDHRL--PNTKVRSAPPAGAAPSTLS----AATPGTSEDHSQSATPP 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 22/55 (40%)
Hoxc4NP_038581.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..130 23/113 (20%)
Antp-type hexapeptide 135..140 0/4 (0%)
Homeodomain 157..213 CDD:459649 22/55 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..264 12/46 (26%)

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