Protein Alignment CG9876 and Cdx1

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_034010.3
• Gene: Cdx1 / 12590
• MGIID: 88360
• Length: 268
• Species: Mus musculus
• Alignment Length: 154
• Identity: 48/154 - (31%)
• Similarity: 68/154 - (44%)
• Gaps: 19/154 - (12%)

  Fly    82 LSSNFGPTGA-GCGGADRPAP---CSGNLPAGGGHHSRKPR---RNRTTFSSAQLTALEKVFERT 139
            |:.:.|..|| ...||.|..|   ...::.|.||..|.|.|   :.|..::..|...|||.|..:
Mouse   112 LAQSLGAPGAPSSPGAPRRTPYEWMRRSVAAAGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYS 176

  Fly   140 HYPDAFVREELATKVHLSEARVQVWFQNRRAKFRR-NERSVGSRTLLDTAPQLVPAPISNNMHKY 203
            .|.....:.|||..:.|:|.:|::||||||||.|: |::....:..|  .|..:|.|:...
Mouse   177 RYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPL--PPTQLPLPLDGT---- 235

  Fly   204 ANMPHPHPQPPPPPGAYALNFGPL 227
                 |.|..||.......|.|.|
Mouse   236 -----PTPSGPPLGSLCPTNAGLL 254

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	22/58 (38%)
Cdx1	NP_034010.3	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..152		13/39 (33%)
		Caudal_act	13..140	CDD:461413	8/27 (30%)
		Homeodomain	156..211	CDD:459649	21/54 (39%)
		Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902	157..178		6/20 (30%)
		Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902	196..207		6/10 (60%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	209..268		13/57 (23%)