Protein Alignment CG9876 and Pax3

DIOPT Version :10

• Sequence 1: NP_611756.1
• Gene: CG9876 / 37668
• FlyBaseID: FBgn0034821
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_446162.1
• Gene: Pax3 / 114502
• RGDID: 620431
• Length: 484
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 83/280 - (29%)
• Similarity: 114/280 - (40%)
• Gaps: 89/280 - (31%)

  Fly    15 NPGNFYYG----------------PTVS--GEIYSSHQSHNLESEDKLE--DREESGRNLDKIHR 59
            |||.|.:.                |:||  ..|..|......|.|..||  :.|||    :|..:
  Rat   125 NPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES----EKKAK 185

  Fly    60 FSVDNIMEMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTF 124
            .|:|.|:..:..|....:                 |:|  .....:||.     .||.||:||||
  Rat   186 HSIDGILSERASAPQSDE-----------------GSD--IDSEPDLPL-----KRKQRRSRTTF 226

  Fly   125 SSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLL---- 185
            ::.||..||:.||||||||.:.|||||.:..|:||||||||.||||::|   :..|:..|:
  Rat   227 TAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR---KQAGANQLMAFNH 288

  Fly   186 -------DTA-PQLVPAPISNNMHKYANMPHP---------HPQPPPP--------------PGA 219
                   .|| |.|....:|...::..::|..         .|||.||              ..|
  Rat   289 LIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNADSSSA 353

  Fly   220 YALNFGPLELRSCQNYTNCY 239
            |.|   |.......:||:.:
  Rat   354 YCL---PSTRHGFSSYTDSF 370

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9876	NP_611756.1	Homeodomain	118..174	CDD:459649	36/55 (65%)
Pax3	NP_446162.1	PAX	34..159	CDD:128645	8/33 (24%)
		Homeodomain	220..276	CDD:459649	37/58 (64%)
		Pax7	347..391	CDD:403540	6/27 (22%)