DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and Pitx1

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_446076.1 Gene:Pitx1 / 113983 RGDID:69253 Length:315 Species:Rattus norvegicus


Alignment Length:346 Identity:87/346 - (25%)
Similarity:118/346 - (34%) Gaps:140/346 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LHSLPVG----NPGNFYYGPTVSGEIYSSHQSHNLESEDKLED--REESGRNL-DKIHRFSVDNI 65
            |..||.|    .|.....||       |.|.:...:..:.||:  .|.|..:| ||         
  Rat    10 LERLPEGLRPPPPPPHDMGP-------SFHLARTADPREPLENSASESSDADLPDK--------- 58

  Fly    66 MEMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSAQLT 130
                    .:|..| ::..:.|...||||.|:.||            ..:|.||.||.|:|.||.
  Rat    59 --------ERGGEA-KVPEDGGAGSAGCGSAEDPA------------KKKKQRRQRTHFTSQQLQ 102

  Fly   131 ALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLLD--------- 186
            .||..|:|..|||..:|||:|...:|:|.||:|||:|||||:|:.||:    ..||         
  Rat   103 ELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERN----QQLDLCKGGYVPQ 163

  Fly   187 ----------------------TAPQLVPAPISNNMHKYAN------------------------ 205
                                  .|..|.|||:|.....:.|                        
  Rat   164 FSGLVQPYEDVYAAAGYSYNNWAAKSLAPAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMTMPS 228

  Fly   206 ---------MPH-----------------------PHPQPPPPPGAYA----LNFGPLELRSCQN 234
                     ||:                       |:..|..|...|.    .:...|.|:|.|:
  Rat   229 SMGPGSVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDTCNSSLASLRLKSKQH 293

  Fly   235 YTNCYGGFGSSGASGSGVCSF 255
            .:..|||. ...|||...|.:
  Rat   294 SSFGYGGL-QGPASGLNACQY 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 31/55 (56%)
Pitx1NP_446076.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..103 35/129 (27%)
Homeodomain 90..146 CDD:459649 31/55 (56%)
Interaction with PIT-1. /evidence=ECO:0000250 149..280 16/134 (12%)
OAR 277..294 CDD:461067 4/16 (25%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 281..294 4/12 (33%)
Nuclear localization signal. /evidence=ECO:0000255 287..291 1/3 (33%)

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