DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9876 and vsx2

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:XP_004917101.1 Gene:vsx2 / 100493176 XenbaseID:XB-GENE-853775 Length:377 Species:Xenopus tropicalis


Alignment Length:187 Identity:55/187 - (29%)
Similarity:76/187 - (40%) Gaps:53/187 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LPVGNPGNFYYGPTV------SGEIYSSHQSHNLESEDKLEDREESGRNLDKIHRFSVDNIM--- 66
            |.:|:|.    ||.:      .|....|..|.::.|.|:...:..|.....|..|....|||   
 Frog    69 LLLGDPP----GPRIQQTGQEEGSRTCSSDSEDVSSSDRKLPKSLSQSKKRKKRRHRYPNIMFEG 129

  Fly    67 ---EMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSAQ 128
               ::|...::..|.|:                                     |..||.|:|.|
 Frog   130 NRPKIKFGVFTGNKGAI-------------------------------------RSFRTIFTSYQ 157

  Fly   129 LTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRTLL 185
            |..|||.|...||||.:.||.||.|..|.|.|:||||||||||:|:.|:..|..:::
 Frog   158 LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVM 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 33/55 (60%)
vsx2XP_004917101.1 Homeodomain 147..203 CDD:459649 33/55 (60%)
OAR 318..336 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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