DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9876 and shox

DIOPT Version :10

Sequence 1:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster
Sequence 2:XP_004911874.1 Gene:shox / 100486480 XenbaseID:XB-GENE-920752 Length:334 Species:Xenopus tropicalis


Alignment Length:144 Identity:57/144 - (39%)
Similarity:71/144 - (49%) Gaps:40/144 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 GHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRN 175
            |....|.||:||.|:..||..||::|:.|||||||:||||:.::.||||||||||||||||.|:.
 Frog   150 GQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ 214

  Fly   176 ERSV---GSRTLLDTAPQLVPAPISNNMHKYANM-----------------------PHPHPQ-- 212
            |..:   |...:|.|...|....::    .|.||                       ||.||.  
 Frog   215 ENQMHKGGYGVILGTGSHLETCRVA----PYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLA 275

  Fly   213 --------PPPPPG 218
                    ||||.|
 Frog   276 AHAPYLMFPPPPFG 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 37/55 (67%)
shoxXP_004911874.1 Homeodomain 157..213 CDD:459649 37/55 (67%)
OAR 314..330 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.