DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment twi and Hand1

DIOPT Version :10

Sequence 1:NP_523816.2 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_067603.1 Gene:Hand1 / 59112 RGDID:621206 Length:216 Species:Rattus norvegicus


Alignment Length:181 Identity:57/181 - (31%)
Similarity:86/181 - (47%) Gaps:25/181 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 VMSPACLADDGSAGSLLDGSDAGGKAFRKPRRRLKRKPSKTEET-DEFSNQRVMANVRERQRTQS 377
            ::|||..|.|..||.....:.....|: .|..|..:.|.:.|.. .....::.....:||:||:|
  Rat    46 LLSPADAAPDFPAGGPPPTTAVAAAAY-GPDARPSQSPGRLEALGGRLPRRKGSGPKKERRRTES 109

  Fly   378 LNDAFKSLQQIIPTLPSD-KLSKIQTLKLATRYIDFLCRMLSSSDISLLKALEAQ-GSPSAYGSA 440
            :|.||..|::.||.:|:| |||||:||:|||.||.:|..:|         |.:|| |.|.|:   
  Rat   110 INSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVL---------AKDAQAGDPEAF--- 162

  Fly   441 SSLLSAAANGAEADLK--CLRKANGAP--IIPPEK-----LSYLFGVWRME 482
            .:.|.....|.|:..|  ..::..|.|  :.|.||     ..:...||.:|
  Rat   163 KAELKKTDGGRESKRKRESPQQHEGLPPALGPSEKRIKGRTGWPQQVWALE 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_523816.2 bHLH_TS_TWIST 363..421 CDD:381470 27/58 (47%)
Hand1NP_067603.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 73..109 8/35 (23%)
bHLH_TS_HAND1 94..153 CDD:381522 28/67 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..203 9/37 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.