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Protein Alignment twi and msc
DIOPT Version :9
Sequence 1: | NP_001033967.1 |
Gene: | twi / 37655 |
FlyBaseID: | FBgn0003900 |
Length: | 490 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_684279.3 |
Gene: | msc / 556396 |
-ID: | - |
Length: | 160 |
Species: | Danio rerio |
Alignment Length: | 140 |
Identity: | 46/140 - (32%) |
Similarity: | 63/140 - (45%) |
Gaps: | 31/140 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 286 SAYSSSDRDDMEYARHNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKAFRKPRRRLKR- 349
|..|.||.:|::...| ||.|.....||.||... ||:.:..|
Zfish 2 STGSVSDPEDLQSISH-----------------CLDDSEDDFSLDDGLKP------KPKSKTPRG 43
Fly 350 ------KPSKTEETDEFSNQRVMANVRERQRTQSLNDAFKSLQQIIPTLPSD-KLSKIQTLKLAT 407
||......|...:||..||.|||.|.:.|:.||..|:..:|.:|:| ||||:.||:||:
Zfish 44 AASNTNKPQMKLAKDGRQSQRNAANARERARMRVLSKAFSRLKTSLPWVPADTKLSKLDTLRLAS 108
Fly 408 RYIDFLCRML 417
.||..|.::|
Zfish 109 SYISHLRQLL 118
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
twi | NP_001033967.1 |
HLH |
363..413 |
CDD:278439 |
25/50 (50%) |
msc | XP_684279.3 |
HLH |
68..120 |
CDD:197674 |
24/51 (47%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C170583761 |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.840 |
|
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