DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment twi and atoh1b

DIOPT Version :10

Sequence 1:NP_523816.2 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001122151.1 Gene:atoh1b / 493915 ZFINID:ZDB-GENE-041201-1 Length:206 Species:Danio rerio


Alignment Length:165 Identity:50/165 - (30%)
Similarity:76/165 - (46%) Gaps:35/165 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 YSSSDRDDMEYARHNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKAFRKPRRRLKRKP- 351
            |||:..:   |||   .::.|.:...:.||...::|..|||                   |.:| 
Zfish    43 YSSAVEN---YAR---TAADSPMEKYISSPQAASEDHHAGS-------------------KARPG 82

  Fly   352 SKTEETDEFSNQRVMANVRERQRTQSLNDAFKSLQQIIPTLPSD-KLSKIQTLKLATRYIDFLCR 415
            ||...:....::||.||.|||:|...||.||..|:.:||:|.:: ||||..||::|..||..|. 
Zfish    83 SKASVSGPQRHRRVAANARERRRMHGLNRAFDKLRSVIPSLENEKKLSKYDTLQMAQIYITELS- 146

  Fly   416 MLSSSDISLLKALEAQGSPSAYGSASSLLSAAANG 450
                   .||:.:...|:|.:..:|......|.:|
Zfish   147 -------ELLEGVVQSGAPGSQRTAIPYAIDATSG 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_523816.2 bHLH_TS_TWIST 363..421 CDD:381470 26/58 (45%)
atoh1bNP_001122151.1 bHLH_TS_ATOH1 89..152 CDD:381556 28/70 (40%)

Return to query results.
Submit another query.