DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment twi and ascl1b

DIOPT Version :10

Sequence 1:NP_523816.2 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_571306.1 Gene:ascl1b / 30478 ZFINID:ZDB-GENE-980526-174 Length:195 Species:Danio rerio


Alignment Length:128 Identity:39/128 - (30%)
Similarity:61/128 - (47%) Gaps:15/128 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 LDGSDAGGKAFRKPRR------RLKRKPSKTEETDEFSNQRVMA----NVRERQRTQSLNDAFKS 384
            |:..|...|..::.|.      |.||:.:..........|:.||    |.|||.|.:.:|..|::
Zfish    24 LEKQDRECKVLKRQRSSSPELLRCKRRLTFNGLGYTIPQQQPMAVARRNERERNRVKQVNMGFQT 88

  Fly   385 LQQIIPT-LPSDKLSKIQTLKLATRYIDFLCRMLSSSDISLLKALEAQGSPSAYGSASSLLSA 446
            |:|.:|. ..:.|:||::||:.|..||..|.::|...|  .:.|:...|.||.  |.|:..||
Zfish    89 LRQHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHD--AVSAVLQCGVPSP--SVSNAYSA 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_523816.2 bHLH_TS_TWIST 363..421 CDD:381470 23/62 (37%)
ascl1bNP_571306.1 bHLH_SF 63..133 CDD:469605 25/71 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 141..164 3/7 (43%)

Return to query results.
Submit another query.