DRSC/TRiP Functional Genomics Resources

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Protein Alignment twi and Neurod1

DIOPT Version :10

Sequence 1:NP_523816.2 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_062091.1 Gene:Neurod1 / 29458 RGDID:3165 Length:357 Species:Rattus norvegicus


Alignment Length:94 Identity:35/94 - (37%)
Similarity:54/94 - (57%) Gaps:6/94 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 RKPRRRLKRKPSKTE-ETDEFSNQRVMANVRERQRTQSLNDAFKSLQQIIPTL-PSDKLSKIQTL 403
            :||:||..:|...|: ..:.|..:|:.||.|||.|...||.|..:|::::|.. .:.|||||:||
  Rat    79 QKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETL 143

  Fly   404 KLATRYIDFLCRMLSSSD----ISLLKAL 428
            :||..||..|..:|.|..    :|.::.|
  Rat   144 RLAKNYIWALSEILRSGKSPDLVSFVQTL 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_523816.2 bHLH_TS_TWIST 363..421 CDD:381470 26/58 (45%)
Neurod1NP_062091.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..94 6/14 (43%)
bHLH_TS_NeuroD1 75..160 CDD:381562 32/80 (40%)
Nuclear localization signal. /evidence=ECO:0000255 87..93 1/5 (20%)
Neuro_bHLH 160..284 CDD:463621 2/13 (15%)

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