DRSC/TRiP Functional Genomics Resources

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Protein Alignment twi and neurog3

DIOPT Version :9

Sequence 1:NP_001033967.1 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_571890.1 Gene:neurog3 / 114411 ZFINID:ZDB-GENE-010608-4 Length:208 Species:Danio rerio


Alignment Length:149 Identity:48/149 - (32%)
Similarity:74/149 - (49%) Gaps:29/149 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 FRKPRR---RLKRKPSKTEETDEFSNQRVMANVRERQRTQSLNDAFKSLQQIIPTLPSD-KLSKI 400
            ||:.:.   :||:..|.:.:.   .|:||.||.|.|.|..:||.|..:|:.::||.|.| ||:||
Zfish    56 FREDKTSNGKLKKLMSTSRQR---GNRRVKANDRGRHRMHNLNSALDNLRSVLPTFPDDAKLTKI 117

  Fly   401 QTLKLATRYIDFLCRMLSSSDISLLKALEAQGS-----PSA-----YGSASSLLS------AAAN 449
            :||:.|..||..|...|..:|....::..||..     |:|     ||::|:..|      :::|
Zfish   118 ETLRFARNYIWALSETLRIADHVRQRSNHAQDQENLAVPNACLDVRYGASSACASKWHSTNSSSN 182

  Fly   450 -----GAEADLKCLRKANG 463
                 |...|| .|.:.||
Zfish   183 WQETQGFYTDL-LLEEFNG 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_001033967.1 HLH 363..413 CDD:278439 24/50 (48%)
neurog3NP_571890.1 HLH 84..135 CDD:197674 22/50 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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