DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment twi and LOC100493338

DIOPT Version :10

Sequence 1:NP_523816.2 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:XP_002937913.2 Gene:LOC100493338 / 100493338 XenbaseID:XB-GENE-29081655 Length:206 Species:Xenopus tropicalis


Alignment Length:171 Identity:63/171 - (36%)
Similarity:79/171 - (46%) Gaps:36/171 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 EPANSLNGSAYSSSDRDDMEYARHNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKAFRK 342
            :|.:..||..   ||.:|:|        ||||               |:...|.|.|.||.....
 Frog    46 QPGDCNNGLL---SDAEDLE--------SVSD---------------SSDKSLGGGDEGGCCSPA 84

  Fly   343 PRRRLKRKPSKTEETDEFSNQRVMANVRERQRTQSLNDAFKSLQQIIPTLPSD-KLSKIQTLKLA 406
            ...|.|||  :.......|.||..||.|||.||.|:|.||.:|:.:|||.|:| |||||:||:||
 Frog    85 EESRGKRK--RKSRLSGVSKQRQAANARERDRTHSVNTAFTALRTLIPTEPADRKLSKIETLRLA 147

  Fly   407 TRYIDFLCRMLSSSDISLLKALEAQGSPSAYGSASSLLSAA 447
            :.||..|..:|      ||......|.| .....||:.|||
 Frog   148 SSYISHLANIL------LLGEDCMDGQP-CLQYRSSMASAA 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_523816.2 bHLH_TS_TWIST 363..421 CDD:381470 32/58 (55%)
LOC100493338XP_002937913.2 bHLH_TS_scleraxis_like 104..158 CDD:381471 30/53 (57%)

Return to query results.
Submit another query.