DRSC/TRiP Functional Genomics Resources

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Protein Alignment twi and atoh1

DIOPT Version :10

Sequence 1:NP_523816.2 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:XP_004911142.1 Gene:atoh1 / 100488309 XenbaseID:XB-GENE-6452084 Length:260 Species:Xenopus tropicalis


Alignment Length:249 Identity:68/249 - (27%)
Similarity:89/249 - (35%) Gaps:94/249 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 HNALSSVSDLNGGVMSPACLADDGSAGSLLDGSD-------------------AGGKAFRKPRRR 346
            |.|.:...:|......|..|..|    .|||.||                   ..|:| .|.|..
 Frog     6 HGAAADWCELKELPSEPGLLGRD----YLLDSSDPRSWLSAASLQSRPEYVLHPQGRA-HKVREL 65

  Fly   347 LKRK------PSKTEETDEFSNQ--------------------RVMANVRERQRTQSLNDAFKSL 385
            .|.|      ..:.||.||.:::                    |:.||.|||:|...||.||..|
 Frog    66 CKLKGLQDEEDEEEEEDDEETSEGLCRHRGGPGKGPGGVQKQRRLAANARERRRMHGLNHAFDQL 130

  Fly   386 QQIIPTLPSD-KLSKIQTLKLATRYIDFLCRMLSSSDISLLKA--------------LEAQGSPS 435
            :.:||:..:| ||||.:||::|..||:.|      ||  ||:|              |.:.|.|.
 Frog   131 RNVIPSFNNDKKLSKYETLQMAQIYINAL------SD--LLQAPPDTRDPPCPPTYQLHSGGEPR 187

  Fly   436 AYGSASSLLSAAANGAEADLKCLRKANGAPIIPPEKLSYLFGVWRMEGDAQHQK 489
            ...|||               |.|.:...|...|  ||:.|    .||....||
 Frog   188 LAQSAS---------------CRRFSGDFPGQSP--LSFQF----QEGAGLSQK 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_523816.2 bHLH_TS_TWIST 363..421 CDD:381470 25/78 (32%)
atoh1XP_004911142.1 bHLH_TS_ATOH1 103..166 CDD:381556 29/70 (41%)

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