DRSC/TRiP Functional Genomics Resources

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Protein Alignment twi and scxa

DIOPT Version :10

Sequence 1:NP_523816.2 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001076538.2 Gene:scxa / 100034489 ZFINID:ZDB-GENE-060503-414 Length:204 Species:Danio rerio


Alignment Length:147 Identity:50/147 - (34%)
Similarity:67/147 - (45%) Gaps:33/147 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 LADDGSAGSLLDGS-------DAGGKAFRKPRRRLKRKPS-----------KTEETDEFSN---- 362
            :::|...||...||       |..|...:..|   |||.|           .|..|....:    
Zfish    22 MSEDDENGSESSGSDDRSFHLDTSGYDLKVGR---KRKSSVGGGGRLIGVTPTIPTGTIGHVPEI 83

  Fly   363 -QRVMANVRERQRTQSLNDAFKSLQQIIPTLPSD-KLSKIQTLKLATRYIDFLCRMLSSSDISLL 425
             ||..||.|||.||.|:|.||.:|:.:|||.|:| |||||:||:||:.||..|      .::.|:
Zfish    84 RQRNAANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHL------GNVLLV 142

  Fly   426 KALEAQGSPSAYGSASS 442
            ......|.|...|..|:
Zfish   143 GEACGDGQPCHSGGPST 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_523816.2 bHLH_TS_TWIST 363..421 CDD:381470 31/58 (53%)
scxaNP_001076538.2 bHLH_TS_scleraxis 82..149 CDD:381521 32/72 (44%)

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