DRSC/TRiP Functional Genomics Resources

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Protein Alignment twi and si:ch211-246m6.4

DIOPT Version :9

Sequence 1:NP_001033967.1 Gene:twi / 37655 FlyBaseID:FBgn0003900 Length:490 Species:Drosophila melanogaster
Sequence 2:XP_001340709.1 Gene:si:ch211-246m6.4 / 100000527 ZFINID:ZDB-GENE-050208-498 Length:193 Species:Danio rerio


Alignment Length:171 Identity:56/171 - (32%)
Similarity:74/171 - (43%) Gaps:35/171 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 SQQLQQQQPHQQSHAQMHFQNAYRQSFEGYEPANSLNGSAYSSSDRDDMEYARHNALSSVSDLNG 312
            ||.|:...|....||.......:     |...|:..:.:....||.||:                
Zfish     3 SQLLRHGLPTTTLHAMKSSTGEH-----GLAHAHPAHDTQSLPSDPDDL---------------- 46

  Fly   313 GVMSPACLADDGSAGSLLDGSDAGGKAFRKPRRRLKRKPSKTEETDEFSNQRVMANVRERQRTQS 377
                     |.||..|  :.|...|...|..|...:|:.|:  .....|.||..||.|||.||.|
Zfish    47 ---------DSGSDSS--EKSTGAGSPTRGHREVRRRRGSR--RLAGVSKQRQAANARERDRTHS 98

  Fly   378 LNDAFKSLQQIIPTLPSD-KLSKIQTLKLATRYIDFLCRML 417
            :|.||.||:.:|||.|:| |||||:||:||:.||..|..:|
Zfish    99 VNTAFTSLRTLIPTEPADRKLSKIETLRLASSYISHLANVL 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twiNP_001033967.1 HLH 363..413 CDD:278439 31/50 (62%)
si:ch211-246m6.4XP_001340709.1 HLH 84..135 CDD:278439 31/50 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583782
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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