DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNBP and CSDP1

DIOPT Version :10

Sequence 1:NP_611739.1 Gene:CNBP / 37646 FlyBaseID:FBgn0034802 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_195326.1 Gene:CSDP1 / 829758 AraportID:AT4G36020 Length:299 Species:Arabidopsis thaliana


Alignment Length:189 Identity:68/189 - (35%)
Similarity:90/189 - (47%) Gaps:51/189 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFGHFARACP 71
            ||.|...||.::||         |:|||||||....||.:|         ||.|...|||||.|.
plant   102 CYNCGELGHISKDC---------GIGGGGGGGERRSRGGEG---------CYNCGDTGHFARDCT 148

  Fly    72 EEA------------ERCYRCNGIGHISKDCTQ-------------ADNPTCYRCNKTGHWVRNC 111
            ...            :.||.|..:||:::||||             ..|..||.|...||:.|:|
plant   149 SAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDC 213

  Fly   112 PEAV---NER--GPTNVSCYKCNRTGHISKNCP---ETSKTCYGCGKSGHLRRECDEKG 162
            .:.|   |.|  |..:.:||.|...|||:::|.   :.|:.||.||.||||.|:||::|
plant   214 TQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRG 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNBPNP_611739.1 PTZ00368 6..161 CDD:173561 67/186 (36%)
CSDP1NP_195326.1 CSD 12..77 CDD:278729
PTZ00368 134..297 CDD:173561 50/139 (36%)
Blue background indicates that the domain is not in the aligned region.

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