DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CNBP and GRP2B

DIOPT Version :9

Sequence 1:NP_001188992.1 Gene:CNBP / 37646 FlyBaseID:FBgn0034802 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_179702.1 Gene:GRP2B / 816641 AraportID:AT2G21060 Length:201 Species:Arabidopsis thaliana


Alignment Length:75 Identity:39/75 - (52%)
Similarity:44/75 - (58%) Gaps:14/75 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TCYKCNRPGHFARDCSLGGGGGPGGVGGG----GGGGGGGMRGNDGGGMRRNREKCYKCNQFGHF 66
            :|:||..|||.||:||.||||..||.|||    |||||||     |||:     .||.|.:.|||
plant   137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGG-----GGGL-----SCYSCGESGHF 191

  Fly    67 ARACPEEAER 76
            ||.|.....|
plant   192 ARDCTSGGAR 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNBPNP_001188992.1 PTZ00368 6..161 CDD:173561 39/75 (52%)
GRP2BNP_179702.1 CSD 15..81 CDD:278729
zf-CCHC 136..153 CDD:278525 9/15 (60%)
zf-CCHC 182..197 CDD:278525 9/14 (64%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X357
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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