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Protein Alignment CNBP and lin-28
DIOPT Version :9
Sequence 1: | NP_001188992.1 |
Gene: | CNBP / 37646 |
FlyBaseID: | FBgn0034802 |
Length: | 165 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001021085.1 |
Gene: | lin-28 / 172626 |
WormBaseID: | WBGene00003014 |
Length: | 227 |
Species: | Caenorhabditis elegans |
Alignment Length: | 134 |
Identity: | 32/134 - (23%) |
Similarity: | 50/134 - (37%) |
Gaps: | 21/134 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 12 RPGHFARDCSLGGGGGPGGVGGGGGGGG-GGMRGNDGGGMRRNREKCYKCNQFG-HFARACPEEA 74
|..::.::.|.|.|.....|.|...|.| .|.|.:..|..:....:|::|.:|. |.|::||.
Worm 98 RVSYYIQERSNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPN-- 160
Fly 75 ERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHIS-KNC 138
.:.|...||.|....|....|||...:..|..|:..:.......: |:.
Worm 161 ----------------VKTDAKVCYTCGSEEHVSSICPERRRKHRPEQVAAEEAEAARMAAEKSS 209
Fly 139 PETS 142
|.||
Worm 210 PTTS 213
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
CNBP | NP_001188992.1 |
PTZ00368 |
6..161 |
CDD:173561 |
32/134 (24%) |
lin-28 | NP_001021085.1 |
CSD |
55..119 |
CDD:278729 |
5/20 (25%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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