DRSC/TRiP Functional Genomics Resources

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Protein Alignment ReepA and reep1

DIOPT Version :9

Sequence 1:NP_001188988.1 Gene:ReepA / 37643 FlyBaseID:FBgn0261564 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_021323143.1 Gene:reep1 / 799901 ZFINID:ZDB-GENE-110411-267 Length:308 Species:Danio rerio


Alignment Length:316 Identity:123/316 - (38%)
Similarity:165/316 - (52%) Gaps:44/316 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIETFTDIFISWLPFYYEVKVALVFWL 223
            |..|||||||:|||||::|||:||||||||||:||.||.:|..||||:.|||||||:|:|.|.||
Zfish    12 LIFGTLYPAYSSYKAVKSKDVREYVKWMMYWIIFALFTTVEVITDIFLCWLPFYYELKIAFVVWL 76

  Fly   224 LSPATKGSSTLYRKFVHPMLTRHEQEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKGG 288
            |||.|||||.||||||||.|:..|::||||:.|||::.|..::..|.||:|.|....:..|.||.
Zfish    77 LSPYTKGSSVLYRKFVHPTLSSKEKDIDEYLCQAKDKSYDTLMHFGRKGLNVAATAAVMAATKGQ 141

  Fly   289 GNLVQTIKRSYSLSDLSEPDMHRTQDELDDVMMSSMTSSAVVMRSTATGARLLRPRNQTPVGRSG 353
            |.|.:.: ||:|:.|||            .......|:||   .|..|.....:.|.:|.: ||.
Zfish   142 GVLSERL-RSFSMQDLS------------SFQAEGQTNSA---SSVTTQPAAAQHRTRTMM-RSK 189

  Fly   354 SGTRHSTGMYF--TEVDVTAKNAGDFNYNIRSQDDI-----------SSGYSSAEPVSGL-SRTS 404
            |.|.:|.|..|  ||.::       .|.....:..|           .......|||:.| |...
Zfish   190 SETGYSKGHDFDMTEYEL-------LNLEQSKEPPIPPTPTPILTLSQPNLPQTEPVTPLPSPPE 247

  Fly   405 SMTNASKARAKSKRNELLEEMRDEVYLDNQLYFQGVQRKSSVPEAEELKIVESSES 460
            |...:|.....|:     |....|.::.:...|: .:|::..|....|:....|.|
Zfish   248 SQDQSSPPTVASE-----EPQEKEDFISSSPQFR-FKRRAPEPPPRPLRPFTRSRS 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ReepANP_001188988.1 TB2_DP1_HVA22 158..241 CDD:281172 61/81 (75%)
reep1XP_021323143.1 TB2_DP1_HVA22 19..94 CDD:308643 56/74 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4881
eggNOG 1 0.900 - - E1_COG5052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 1 1.000 - - FOG0000584
OrthoInspector 1 1.000 - - otm25236
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2950
SonicParanoid 1 1.000 - - X586
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.850

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