DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ReepA and reep2

DIOPT Version :9

Sequence 1:NP_001188988.1 Gene:ReepA / 37643 FlyBaseID:FBgn0261564 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001025398.1 Gene:reep2 / 568927 ZFINID:ZDB-GENE-050706-125 Length:268 Species:Danio rerio


Alignment Length:272 Identity:113/272 - (41%)
Similarity:159/272 - (58%) Gaps:42/272 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 GTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIETFTDIFISWLPFYYEVKVALVFWLLSP 226
            |||||||:|||||:||:|||||||||||||||.||..||.||:.:||.|||:|:|:|.|.|||||
Zfish    15 GTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFALFTTAETITDMLLSWFPFYFELKIAFVIWLLSP 79

  Fly   227 ATKGSSTLYRKFVHPMLTRHEQEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKGGGNL 291
            .|||||.||||||||.|:..|:|||||:.|||:|.|..:::.|.:|:|.|....:..|.||.|.|
Zfish    80 YTKGSSVLYRKFVHPTLSNKEREIDEYITQAKDRSYDTMMRFGRRGLNIAATAAVTAATKGQGVL 144

  Fly   292 VQTIKRSYSLSDLSEPDMHRTQDEL-----DDVMMSSMTSSAVVMRSTATGARLLRPRNQTPVGR 351
            .:.: ||:|:.||:   :.:.:|||     ||      |.:|..:....|..|.:|   .||| .
Zfish   145 SEKL-RSFSMQDLT---LIQNEDELQLEGGDD------THTAATLPRAKTATRTVR---ATPV-P 195

  Fly   352 SGSGTRHSTGMYFTEVDVTAKNAGDFNYNIRSQD--DISSGYSSAEPVSGLSRTSSMTNASKARA 414
            :.:.::||:                     ||.|  |..:.:|..:......:..::|.|:|..|
Zfish   196 ADTESQHSS---------------------RSDDQSDSRTEHSDEDAADKAPKRIAITRAAKKPA 239

  Fly   415 KSKRNELLEEMR 426
            .:|..:..:.::
Zfish   240 AAKTEQTTKTVK 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ReepANP_001188988.1 TB2_DP1_HVA22 158..241 CDD:281172 60/78 (77%)
reep2NP_001025398.1 TB2_DP1_HVA22 7..94 CDD:281172 60/78 (77%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 170..268 22/113 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4881
eggNOG 1 0.900 - - E1_COG5052
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41146
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 1 1.000 - - FOG0000584
OrthoInspector 1 1.000 - - otm25236
orthoMCL 1 0.900 - - OOG6_102704
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2950
SonicParanoid 1 1.000 - - X586
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.750

Return to query results.
Submit another query.