DRSC/TRiP Functional Genomics Resources

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Protein Alignment ReepA and Reep1

DIOPT Version :9

Sequence 1:NP_001188988.1 Gene:ReepA / 37643 FlyBaseID:FBgn0261564 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_030111355.1 Gene:Reep1 / 52250 MGIID:1098827 Length:284 Species:Mus musculus


Alignment Length:304 Identity:114/304 - (37%)
Similarity:144/304 - (47%) Gaps:71/304 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIETFTDIFISWLPFYYEVKVALVFWL 223
            |..|||||||.|||||::||:|||||||||||:||.||..|||||||:.|.|||||:|:|.|.||
Mouse    12 LIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWL 76

  Fly   224 LSPATKGSSTLYRKFVHPMLTRHEQEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKGG 288
            |||.|||||.||||||||.|:..|:|||:.:.|||:|.|.|::..|.:|:|.|....:..|.||.
Mouse    77 LSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQ 141

  Fly   289 GNLVQTIKRSYSLSDLSEPDMHRTQDELDDVMMSSMTSSAVVMRSTATGARLLRPRNQTPVGRSG 353
            |.|.:.: ||:|:.||                            :|..|.....|....|.|...
Mouse   142 GALSERL-RSFSMQDL----------------------------TTIRGDGAPAPSGPPPPGTGR 177

  Fly   354 SGTRHSTGMYFTEVDVTAKNA---------------GDFNYNIRSQDDISSGYSSAEPVSGLSRT 403
            |..:||..........:|.::               ||.|         ..|..|.||       
Mouse   178 SSGKHSQPKMSRSASESAGSSVCTCCSTCRTRKVVEGDVN---------EGGVKSWEP------- 226

  Fly   404 SSMTNASKARAKSKRNELLEEMRDEVYLDNQLYFQGVQRKSSVP 447
                       ...||.|.....:|..|...:|.....|:|.:|
Mouse   227 -----------HQVRNPLAFSDEEEEDLLEFMYKYKAPRRSELP 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ReepANP_001188988.1 TB2_DP1_HVA22 158..241 CDD:281172 62/81 (77%)
Reep1XP_030111355.1 TB2_DP1_HVA22 19..94 CDD:367349 57/74 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I4856
eggNOG 1 0.900 - - E1_COG5052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000584
OrthoInspector 1 1.000 - - otm42387
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2950
SonicParanoid 1 1.000 - - X586
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.840

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