DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ReepA and Y110A2AR.1

DIOPT Version :9

Sequence 1:NP_001188988.1 Gene:ReepA / 37643 FlyBaseID:FBgn0261564 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_494399.1 Gene:Y110A2AR.1 / 173639 WormBaseID:WBGene00022452 Length:251 Species:Caenorhabditis elegans


Alignment Length:287 Identity:53/287 - (18%)
Similarity:94/287 - (32%) Gaps:94/287 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 GTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIETFTDIFI--SWLPFYYEVKVALVFWLL 224
            |.:.|...|:|.::.......::.|.||.::..|..::.|...|.  .::|||....:.....:.
 Worm    13 GIVAPVIGSFKVLKKPTKPRLIECMHYWTIYGSFLIVDWFLSTFYVSCFIPFYDFFILTFTVLMA 77

  Fly   225 SPATKGSSTLYRKFVHPMLTRHEQEIDEYVNQAKERGYS----------AVLQLGSKGVNYATNV 279
            .|....:|.||.||:.|.|.::|:.||....:..::.:.          |||......:|.|...
 Worm    78 IPHIGFASVLYTKFLAPFLRKYERRIDNISAKLMDKVWENMPIVASAVPAVLASVVATLNSAPTP 142

  Fly   280 LMQTAIKGGGNLVQTIKRSYSLSDLSEPDMHRTQDELDDVMMSSMTSSAVVMRSTATGARLLRPR 344
            :.|..|       :.|..|.||    :|:..|                              ||.
 Worm   143 ISQLEI-------EEIDSSMSL----DPEPRR------------------------------RPA 166

  Fly   345 NQTPVGRSGSGTRHSTGMYFTEVDVTAKNAGDFNYNIRSQDDISSG------------------- 390
            .:||        ..|..::.           |.::.|:..:|::.|                   
 Worm   167 TRTP--------SRSEPIFL-----------DQSFEIQDDEDLNLGGDDVFIRQIKQEIVEEDLE 212

  Fly   391 ---YSSAEPVSGLSRTSSMTNASKARA 414
               .:.|.|.|...|.|:|....:.|:
 Worm   213 IENPADATPPSPPRRRSTMQTRRQLRS 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ReepANP_001188988.1 TB2_DP1_HVA22 158..241 CDD:281172 19/80 (24%)
Y110A2AR.1NP_494399.1 TB2_DP1_HVA22 5..94 CDD:281172 19/80 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.