DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ReepA and reep1

DIOPT Version :9

Sequence 1:NP_001188988.1 Gene:ReepA / 37643 FlyBaseID:FBgn0261564 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_004911337.1 Gene:reep1 / 100490027 XenbaseID:XB-GENE-940702 Length:280 Species:Xenopus tropicalis


Alignment Length:238 Identity:108/238 - (45%)
Similarity:141/238 - (59%) Gaps:20/238 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIETFTDIFISWLPFYYEVKVALVFWL 223
            |..|||||||.|||||::||:|||||||||||:||.|..:|||||:|:.|.|||||:|:|.|.||
 Frog    12 LIFGTLYPAYFSYKAVKSKDIKEYVKWMMYWIIFALFMTVETFTDLFLCWFPFYYELKIAFVAWL 76

  Fly   224 LSPATKGSSTLYRKFVHPMLTRHEQEIDEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKGG 288
            |||.|||||.||||||||.|:..|:||||.:.|||:|.|.|::..|.:|:|.|.:..:..|.||.
 Frog    77 LSPYTKGSSLLYRKFVHPTLSSKEKEIDECLLQAKDRSYDALVHFGKRGLNVAASAAVTAAAKGQ 141

  Fly   289 GNLVQTIKRSYSLSDLSEPDMHRTQDELDDVMMSSMTSSAVVMRSTATGARLLRPRNQTPVGRSG 353
            |.|.:.: ||:|:.|||            .:...:...||..:|:|:..|:....|:.|......
 Frog   142 GALSERL-RSFSMQDLS------------SIRGDAPPQSAAPVRTTSKTAKPKLSRSVTQPPEPS 193

  Fly   354 SGTRHSTGMYF----TEVD---VTAKNAGDFNYNIRSQDDISS 389
            ..|..|.|...    .|||   ||.|...:....|...::.||
 Frog   194 VCTCCSVGKILRVVEVEVDESEVTCKKTYEVKELISDDEEESS 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ReepANP_001188988.1 TB2_DP1_HVA22 158..241 CDD:281172 60/81 (74%)
reep1XP_004911337.1 TB2_DP1_HVA22 7..94 CDD:281172 60/81 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I4851
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 1 1.000 - - FOG0000584
OrthoInspector 1 1.000 - - otm47497
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X586
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

Return to query results.
Submit another query.