DRSC/TRiP Functional Genomics Resources

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Protein Alignment nahoda and Frrs1

DIOPT Version :10

Sequence 1:NP_523815.2 Gene:nahoda / 37641 FlyBaseID:FBgn0034797 Length:1335 Species:Drosophila melanogaster
Sequence 2:NP_033172.2 Gene:Frrs1 / 20321 MGIID:108076 Length:592 Species:Mus musculus


Alignment Length:217 Identity:47/217 - (21%)
Similarity:86/217 - (39%) Gaps:43/217 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   749 DCYGHWKY----PSNCSPQEHTCEYYASWETVGKGDEMRWHIETSN-TQTWTGIGFSDDQRMSQT 808
            :| |:.|:    |.||.|::.....:.|:..    |.....:|.|. :..:....||.||.|...
Mouse   197 EC-GNKKFCVRSPLNCDPEKEPACVFLSFTR----DNQSVMVEMSGPSDGYVSFAFSHDQWMGDD 256

  Fly   809 DAII-----GWVDGRSGRPFLMDTWVLGYAPPKLDDRQDIYNASGRIEKGVTILEFNRKRVSNDE 868
            ||.:     ..||       :..:::.|.:.|.:|.|..:.:.:.|:...|....| |:.::..|
Mouse   257 DAYLCIREDQTVD-------IQSSYLTGRSYPVMDSRGTLEDMAWRLADSVIQCSF-RRNITLPE 313

  Fly   869 QDLSFTDDHCLYLFF---PVLGGAFNVVNKKIRKHEQVPPISSQRVCIKSCGKELESVFVGTSTP 930
            ....|..:...|:||   |...|       :|.:|.|.|.|:.::..:....|.     ||.|..
Mouse   314 AKNRFVLNESYYIFFAEGPSHDG-------RIFRHSQQPLITYEKYNVTDTPKS-----VGGSRS 366

  Fly   931 AP-----SRLVYAVAVKLMNLG 947
            :|     ..|::...:..:::|
Mouse   367 SPLLKAHGALMFVAWMTTVSIG 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nahodaNP_523815.2 LPMO_10 <52..162 CDD:460793
EGF_2 207..238 CDD:400365
DOMON_like 255..>297 CDD:472705
DOMON_DOH <593..693 CDD:187689
DoH 766..918 CDD:214768 33/160 (21%)
Frrs1NP_033172.2 Reeler 32..155 CDD:460411
DOMON_SDR_2_like 192..354 CDD:187686 40/176 (23%)
Cyt_b561_FRRS1_like 320..533 CDD:176490 17/81 (21%)
Blue background indicates that the domain is not in the aligned region.

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