DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and YDR541C

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_010830.4 Gene:YDR541C / 852154 SGDID:S000002949 Length:344 Species:Saccharomyces cerevisiae


Alignment Length:133 Identity:29/133 - (21%)
Similarity:51/133 - (38%) Gaps:40/133 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKKVLVTGG-TGLVGKAL----EAVIKEQSPEDEQW----------FFAGSKDAD---------- 40
            :::|:||.. |.::..|.    ..|..|:|..:..|          :||..|.|:          
Yeast   121 VERVVVTSSCTAIITLAKMDDPSVVFTEESWNEATWESCQIDGINAYFASKKFAEKAAWEFTKEN 185

  Fly    41 -------LT----NLAATQALFAREKPTHVIHLAAMVGGLFHN-MNNNL-DFLRNNLLINDNVLQ 92
                   ||    :|.....||..:...|:.....|:.||.|. :|.:: ||  :::.|:...:.
Yeast   186 EDHIKFKLTTVNPSLLFGPQLFDEDVHGHLNTSCEMINGLIHTPVNASVPDF--HSIFIDVRDVA 248

  Fly    93 TAH 95
            .||
Yeast   249 LAH 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 29/131 (22%)
Epimerase 4..234 CDD:279681 29/130 (22%)
YDR541CNP_010830.4 AR_SDR_e 4..320 CDD:187538 29/133 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345646
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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