DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and GER1

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_177468.2 Gene:GER1 / 843659 AraportID:AT1G73250 Length:323 Species:Arabidopsis thaliana


Alignment Length:321 Identity:107/321 - (33%)
Similarity:174/321 - (54%) Gaps:27/321 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAG-----SKDADLTNLAATQALFAREKPTHVIHL 62
            |:.|.|..||||.|:...::||.       |..     ..:.|||..|..::.|::|||.:||..
plant    18 KIFVAGHRGLVGSAIVRKLQEQG-------FTNLVLKTHAELDLTRQADVESFFSQEKPVYVILA 75

  Fly    63 AAMVGGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNG 127
            ||.|||:..|.....||:..||.|..||:.:|:|.|..|::...|:||:|.....||.|:.:...
plant    76 AAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSCIYPKFAPQPIPESALLTA 140

  Fly   128 PPHPSNYGYSYAKRLIDVQN-HAYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQL 191
            ...|:|..|:.|| :..::. .||..::|....|.:|.|::||:||::||.|||:|.::.|.|: 
plant   141 SLEPTNEWYAIAK-IAGIKTCQAYRIQHGWDAISGMPTNLYGPNDNFHPENSHVLPALMRRFHE- 203

  Fly   192 VTEKTDVPENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEVQEVTIFEVA 256
              .|.:..|.   ..|:|:|.|||:|::..|||:..:::|..|..:|.:.:.:.  |||||.|:|
plant   204 --AKVNGAEE---VVVWGTGSPLREFLHVDDLADACVFLLDRYSGLEHVNIGSG--QEVTIRELA 261

  Fly   257 QAVAKAFNFNGRLVCDTSKSDGQYKKTASNAKLRS--FLPDYAFTDLETAINASVKWYIEN 315
            :.|.:...|.|:|..|.:|.||..:|...::||.|  :.|..:..|   .::.:..||::|
plant   262 ELVKEVVGFEGKLGWDCTKPDGTPRKLMDSSKLASLGWTPKVSLRD---GLSQTYDWYLKN 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 105/317 (33%)
Epimerase 4..234 CDD:279681 80/235 (34%)
GER1NP_177468.2 Epimerase 19..250 CDD:279681 82/244 (34%)
PLN02725 20..323 CDD:178326 106/319 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 132 1.000 Domainoid score I1666
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2484
Inparanoid 1 1.050 171 1.000 Inparanoid score I1537
OMA 1 1.010 - - QHG62684
OrthoDB 1 1.010 - - D922791at2759
OrthoFinder 1 1.000 - - FOG0003311
OrthoInspector 1 1.000 - - otm2604
orthoMCL 1 0.900 - - OOG6_102554
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2209
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.740

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