DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and GER2

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_564040.1 Gene:GER2 / 838368 AraportID:AT1G17890 Length:328 Species:Arabidopsis thaliana


Alignment Length:326 Identity:107/326 - (32%)
Similarity:172/326 - (52%) Gaps:25/326 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAG-----SKDADLTNLAATQALFAREKPTHVIHL 62
            |:.|.|..||||.|:...:::|.       |..     ..:.|||:.:..::.||.|||.:||..
plant    21 KIFVAGHRGLVGSAIVRKLQDQG-------FTNLVLRTHSELDLTSQSDVESFFATEKPVYVILA 78

  Fly    63 AAMVGGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNG 127
            ||.|||:..|.....||:..||.|..||:.:|:..|..|::...|:||:|.....||.|:.:..|
plant    79 AAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGVKKLLFLGSSCIYPKFAPQPIPESALLTG 143

  Fly   128 PPHPSNYGYSYAKRLIDVQNHAYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLV 192
            |..|:|..|:.||........||..::.....|.:|.|::|.:||::||.|||:|.::.|.|:..
plant   144 PLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAISGMPTNLYGQNDNFHPENSHVLPALMRRFHEAK 208

  Fly   193 TEKTDVPENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEVQEVTIFEVAQ 257
            ....|      ...|:|||.|||:|::..|||:..::::..|...|.:.:.:.  .||||.|:|:
plant   209 ANNAD------EVVVWGSGSPLREFLHVDDLADACVFLMDQYSGFEHVNVGSG--VEVTIKELAE 265

  Fly   258 AVAKAFNFNGRLVCDTSKSDGQYKKTASNAKLRS--FLPDYAFTDLETAINASVKWYIENYDQAR 320
            .|.:...|.|:||.||:|.||..:|...::||.|  :.|..:..|   .::.:.:||:||..|.:
plant   266 LVKEVVGFKGKLVWDTTKPDGTPRKLMDSSKLASLGWTPKISLKD---GLSQTYEWYLENVVQKK 327

  Fly   321 K 321
            :
plant   328 Q 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 103/316 (33%)
Epimerase 4..234 CDD:279681 77/234 (33%)
GER2NP_564040.1 PLN02725 23..328 CDD:178326 106/322 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 132 1.000 Domainoid score I1666
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2484
Inparanoid 1 1.050 171 1.000 Inparanoid score I1537
OMA 1 1.010 - - QHG62684
OrthoDB 1 1.010 - - D922791at2759
OrthoFinder 1 1.000 - - FOG0003311
OrthoInspector 1 1.000 - - otm2604
orthoMCL 1 0.900 - - OOG6_102554
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2209
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.740

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