DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and 3BETAHSD/D2

DIOPT Version :10

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_180194.2 Gene:3BETAHSD/D2 / 817166 AraportID:AT2G26260 Length:564 Species:Arabidopsis thaliana


Alignment Length:261 Identity:51/261 - (19%)
Similarity:89/261 - (34%) Gaps:82/261 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVTGGTGLVGKAL-EAVIKEQ---------------SPE------DE-------QWFFAGSKDAD 40
            :||||.|...:.| |.:::.:               .|:      ||       |:..|..:|  
plant    13 VVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLRSGRVQYISADLRD-- 75

  Fly    41 LTNLAATQALFAREKPTHVIHLAAMVGGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCVKVVSC 105
                 .:|.:.|.:....|.|:||...    ::||:......|:....||:....:.|..:::..
plant    76 -----KSQVVKAFQGAEVVFHMAAPDS----SINNHQLQYSVNVQGTQNVIDACVDVGVKRLIYT 131

  Fly   106 LSTCIFPD----------KTSYPIDETMVHNGPPHPSNYGYSYA--KRLIDVQNHAYHDKYGRVY 158
            .|..:..|          ..:|||         .|..:|..:.|  :.||...|    .:.|.:.
plant   132 SSPSVVFDGVHGILNGTESMAYPI---------KHNDSYSATKAEGEELIMKAN----GRNGLLT 183

  Fly   159 TSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLVTEKTDVPENDKVFTVFGSGMPLRQFVYSRDL 223
            ..:.|.:||||.|..      ::|.::           ......|...:.|.|..|..|.|..::
plant   184 CCIRPSSIFGPGDRL------LVPSLV-----------AAARAGKSKFIIGDGNNLYDFTYVENV 231

  Fly   224 A 224
            |
plant   232 A 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 51/261 (20%)
3BETAHSD/D2NP_180194.2 3b-HSD-NSDHL-like_SDR_e 11..358 CDD:187673 51/261 (20%)
Reticulon 384..539 CDD:460562
Blue background indicates that the domain is not in the aligned region.

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