DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and Mat2b

DIOPT Version :10

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_001037747.1 Gene:Mat2b / 683630 RGDID:1593534 Length:334 Species:Rattus norvegicus


Alignment Length:318 Identity:68/318 - (21%)
Similarity:112/318 - (35%) Gaps:88/318 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 KKVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAGS---------KDADLTNLAATQALFAREKPT 57
            ::||:||.|||:|:   ||.||.  :...|...|.         :..:|.:..|...|....:|.
  Rat    29 RRVLITGATGLLGR---AVYKEF--QQSNWHAVGCGFRRARPKFEQVNLLDSEAVHHLIHDFQPH 88

  Fly    58 HVIHLAAMVGGLFHNMNNNLDFLRN--------NLLINDNVLQTAHEQGCVKVVSCLSTCIFPDK 114
            .::|.||         ....|.:.:        |:..:.|:.:.|...|.. ::...|..:| |.
  Rat    89 VIVHCAA---------ERRPDVVESQPDAASQLNVGASGNLAKEAAAIGAF-LIYISSDYVF-DG 142

  Fly   115 TSYPIDETMVHNGPPHPSNYGYSYAKRLIDVQNHAYHDKYGRVYTSVIPCNIFGPHDNYNP---- 175
            |:.|..|..:    |.|.|.   |.|..:|.:.....:..|..... ||. ::|..:....    
  Rat   143 TNPPYTEEDI----PSPLNL---YGKTKLDGEKAVLENNLGAAVLR-IPV-LYGEVEKLEESAVT 198

  Fly   176 ------EVSHVIPGMIYRMHQLVTEKTDVPENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNY 234
                  :.|:....|.:...:..|...||..                  ..|.|||..:      
  Rat   199 VMFDKVQFSNKSANMDHWQQRFPTHVKDVAS------------------VCRQLAEKRM------ 239

  Fly   235 ESVEPII-----LSADEVQEVTIFEVAQAVAKAFNFNG---RLVCDTSKSDGQYKKTA 284
              ::|.|     .|.:|  ::|.:|:|.|:|.|||...   |.:.|:.....|..|.|
  Rat   240 --LDPSIKGTFHWSGNE--QMTKYEMACAIADAFNLPSSHLRPITDSPVIGAQRPKNA 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 68/317 (21%)
Mat2bNP_001037747.1 dTDP_HR_like_SDR_e 30..316 CDD:187564 68/317 (21%)
Required for interaction with MAT2A. /evidence=ECO:0000250|UniProtKB:Q9NZL9 319..334
Blue background indicates that the domain is not in the aligned region.

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