DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and Tdh

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_067455.5 Gene:Tdh / 58865 MGIID:1926231 Length:373 Species:Mus musculus


Alignment Length:284 Identity:62/284 - (21%)
Similarity:100/284 - (35%) Gaps:98/284 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMVG 67
            :||:|||.|.:|..|..:::::         .|..:..|:::        |:.|.||.|....| 
Mouse    57 RVLITGGLGQLGVGLANLLRKR---------FGKDNVILSDI--------RKPPAHVFHSGPFV- 103

  Fly    68 GLFHNMNNNLDF--LRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNGPPH 130
                 ..|.||:  || .:::|..:....|....:..|...:..:..|     ::.|.:||    
Mouse   104 -----YANILDYKSLR-EIVVNHRISWLFHYSALLSAVGEANVSLARD-----VNITGLHN---- 153

  Fly   131 PSNYGYSYAKRLIDVQNHAYHDKYG-RVYTSVIPCNI--FGPHDNYNPEVSHVI--PGMIYRMHQ 190
                       ::||.     .:|. |::   :|..|  |||....||.....|  |..||.:.:
Mouse   154 -----------VLDVA-----AEYNVRLF---VPSTIGAFGPTSPRNPAPDLCIQRPRTIYGVSK 199

  Fly   191 LVTEKTDVPENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEV-------Q 248
            :.||...      .:..:..|:..|...|                   |.|:|||..       .
Mouse   200 VHTELMG------EYYYYRYGLDFRCLRY-------------------PGIISADSQPGGGTTDY 239

  Fly   249 EVTIFEVAQAVAKAFNFNGRLVCD 272
            .|.||   .|.||    ||...|:
Mouse   240 AVQIF---HAAAK----NGTFECN 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 62/284 (22%)
Epimerase 4..234 CDD:279681 48/236 (20%)
TdhNP_067455.5 TDH_SDR_e 57..363 CDD:187580 62/284 (22%)
WcaG 84..363 CDD:223528 53/248 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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