DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gmer and tdh

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_998410.1 Gene:tdh / 406528 ZFINID:ZDB-GENE-040426-2379 Length:375 Species:Danio rerio


Alignment Length:383 Identity:77/383 - (20%)
Similarity:132/383 - (34%) Gaps:157/383 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMVG 67
            |||:|||.|.:|..|..:::::         .|..:..|:::        |:.|::|.|....: 
Zfish    59 KVLITGGLGQLGVGLAKLLRKR---------FGKNNVILSDI--------RKPPSNVFHSGPFI- 105

  Fly    68 GLFHNMNNNLDF--LRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHN---- 126
                 .::.||:  || .:::|:.:....|....:..|...:..:     :..::.|.:||    
Zfish   106 -----YSDILDYKNLR-EIVVNNRITWLVHYSALLSAVGEANVAL-----ARAVNITGLHNILDI 159

  Fly   127 -----------------GPPHPSN-------------YGYSYAKRLIDVQNHAYHDKYG-----R 156
                             ||..|.|             ||.|  |...::....||.:||     .
Zfish   160 AAEHGLRLFVPSTIGAFGPTSPRNPTPDLCVQRPRTIYGVS--KVHAELMGEYYHHRYGLDFRCL 222

  Fly   157 VYTSVIPCN-------------IFGPHD---------NYNPEVSHVIPGMIYRMHQLVTEKTDVP 199
            .|..:|..:             ||  ||         |..|:..  :| |:| :...:....:|.
Zfish   223 RYPGIISADSQPGGGTTDYAVQIF--HDAVKTGKFECNLKPDTR--LP-MMY-IDDCLRATLEVM 281

  Fly   200 ENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYE----SVEPIILSADEVQE--------VTI 252
            |                       |.|....:|.|.    |..|..| |:|||:        ..|
Zfish   282 E-----------------------APLETLSMRTYNINAMSFTPEEL-ANEVQKQLPDLQVSYEI 322

  Fly   253 FEVAQAVAKAF--NFNGRLVCDT-SKSDGQYKKTASNAKLRSFLPDYAFTDL-ETAIN 306
            ..|.||:|.::  ||:     || :::|..:|.            ||...:| :|.:|
Zfish   323 DSVRQAIADSWPMNFD-----DTNARNDWGWKH------------DYDLPELVQTMLN 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 77/383 (20%)
Epimerase 4..234 CDD:279681 52/292 (18%)
tdhNP_998410.1 TDH_SDR_e 59..365 CDD:187580 77/383 (20%)
WcaG 74..371 CDD:223528 68/368 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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