DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gmer and F08F3.10

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_872219.2 Gene:F08F3.10 / 353440 WormBaseID:WBGene00017266 Length:208 Species:Caenorhabditis elegans


Alignment Length:83 Identity:19/83 - (22%)
Similarity:37/83 - (44%) Gaps:6/83 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TGLVGKALEAVIKEQSPEDEQWF-----FAGSKDAD-LTNLAATQALFAREKPTHVIHLAAMVGG 68
            |.::|..|..::..::...|:.|     ||..:.|| :....|.:..|......|.:||.:::..
 Worm    45 TSIIGITLGVLLLVKTEWHEKLFIYKLTFAYIRRADPVRYWIAYRIFFGFWISLHSLHLLSIIST 109

  Fly    69 LFHNMNNNLDFLRNNLLI 86
            :.....:||..|:..||:
 Worm   110 VVAVHKSNLKLLKPQLLV 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 19/83 (23%)
Epimerase 4..234 CDD:279681 19/83 (23%)
F08F3.10NP_872219.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.