DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and Gfus

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_001120927.1 Gene:Gfus / 300036 RGDID:1307028 Length:321 Species:Rattus norvegicus


Alignment Length:320 Identity:191/320 - (59%)
Similarity:241/320 - (75%) Gaps:8/320 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KVLVTGGTGLVGKALEAVIKEQSP-EDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHLAAMV 66
            ::|||||:||||:|::.|:.:.:. ..|:|.|..|||||||:.|.|||||.:.:|||||||||||
  Rat     9 RILVTGGSGLVGRAIQKVVADGAGLPGEEWVFVSSKDADLTDAAQTQALFQKVQPTHVIHLAAMV 73

  Fly    67 GGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPIDETMVHNGPPHP 131
            ||||.|:..||||.|.|:.||||||.:|.|.|..|||||||||||||||:|||||||:||||||.
  Rat    74 GGLFRNIKYNLDFWRKNVHINDNVLHSAFEVGTRKVVSCLSTCIFPDKTTYPIDETMIHNGPPHS 138

  Fly   132 SNYGYSYAKRLIDVQNHAYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLVTEKT 196
            ||:|||||||:|||||.||..::|..:|||||.|:|||:||:|.|..||:||:|:::|.      
  Rat   139 SNFGYSYAKRMIDVQNRAYFQQHGCTFTSVIPTNVFGPYDNFNIEDGHVLPGLIHKVHL------ 197

  Fly   197 DVPENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEVQEVTIFEVAQAVAK 261
             ...:....||:|:|.|.|||:||.|||.|.|||||.|..|||||||..|..||:|.|.|:||.:
  Rat   198 -AKSSGSALTVWGTGKPRRQFIYSLDLARLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVE 261

  Fly   262 AFNFNGRLVCDTSKSDGQYKKTASNAKLRSFLPDYAFTDLETAINASVKWYIENYDQARK 321
            |.:|:|.:..|::||||||||||||.||||:|||:.||..:.|:..:..|:.|||:||||
  Rat   262 AMDFSGEVTFDSTKSDGQYKKTASNGKLRSYLPDFCFTPFKQAVKETCAWFTENYEQARK 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 184/310 (59%)
Epimerase 4..234 CDD:279681 141/230 (61%)
GfusNP_001120927.1 GDP_FS_SDR_e 9..312 CDD:187550 183/309 (59%)
Epimerase 10..245 CDD:279681 149/241 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340923
Domainoid 1 1.000 295 1.000 Domainoid score I1423
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2484
Inparanoid 1 1.050 395 1.000 Inparanoid score I1897
OMA 1 1.010 - - QHG62684
OrthoDB 1 1.010 - - D419698at33208
OrthoFinder 1 1.000 - - FOG0003311
OrthoInspector 1 1.000 - - oto97450
orthoMCL 1 0.900 - - OOG6_102554
Panther 1 1.100 - - LDO PTHR43238
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2209
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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