DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmer and Hsd3b6

DIOPT Version :9

Sequence 1:NP_611734.1 Gene:Gmer / 37638 FlyBaseID:FBgn0267823 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_038849.2 Gene:Hsd3b6 / 15497 MGIID:109598 Length:373 Species:Mus musculus


Alignment Length:209 Identity:48/209 - (22%)
Similarity:82/209 - (39%) Gaps:45/209 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVTGGTGLVGKALEAVIKEQS-------------PEDEQWFFAGSKDADLT----NLAATQAL-F 51
            ||||..|.:|:.:..::.::.             ||..:.||....:..:|    ::..||.| .
Mouse     7 LVTGAGGFLGQRIVQLLMQEKDLEEIRVLDKFFRPETREQFFNLDTNIKVTVLEGDILDTQYLRK 71

  Fly    52 AREKPTHVIHLAAM--VGGLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDK 114
            |.:..:.|||.||:  |.|:.....    .|..||....|:|: |..|..|......|:......
Mouse    72 ACQGISVVIHTAAVIDVTGVIPRQT----ILDVNLKGTQNLLE-ACIQASVPAFIFSSSVDVAGP 131

  Fly   115 TSYPIDETMVHNG-----------PPHPSNYGYSYAKRLIDVQNHAYHDKYGRVYTSVI-PCNIF 167
            .||   :.::.||           .|:|  |....|::.:...|.:.....|.::|..: |..|:
Mouse   132 NSY---KEIILNGNEEEHHESIWSDPYP--YSKKMAEKAVLAANGSMLKIGGTLHTCALRPMYIY 191

  Fly   168 GPHDNYNPEVSHVI 181
            |..   :|.:|:.|
Mouse   192 GER---SPFISNTI 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmerNP_611734.1 GDP_FS_SDR_e 3..313 CDD:187550 48/209 (23%)
Epimerase 4..234 CDD:279681 48/209 (23%)
Hsd3b6NP_038849.2 NADB_Rossmann 5..357 CDD:304358 48/209 (23%)
3Beta_HSD 7..287 CDD:279420 48/209 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0451
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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