DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment YME1L and AT5G57480

DIOPT Version :10

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_200556.1 Gene:AT5G57480 / 835852 AraportID:AT5G57480 Length:520 Species:Arabidopsis thaliana


Alignment Length:351 Identity:81/351 - (23%)
Similarity:137/351 - (39%) Gaps:94/351 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 KSGKTMKYLKTLQTIVVIVVFLGIFLSF-----------------FTTSNGSVFRSIQLGNQVEV 294
            |.|.|::..|..:|::     |..:|.:                 :|.|.|....|  .|:..|.
plant   136 KRGFTLRIKKKDKTLI-----LNSYLDYIMERANEIRRKNQDRLLYTNSRGGSLDS--RGHPWES 193

  Fly   295 DPEEINVTFEDVKGCDEAKQE-LKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVA 358
            .|.:...|||.:......||: :.::.:|.:....:...|....:|.||.|||||||:.:..|:|
plant   194 VPFKHPSTFETLAMDPRKKQQIMDDLKDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMA 258

  Fly   359 GEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEID-------------SVGA 410
            .......:..   |..||......|::     ..|..:..:|.|::||             :|.:
plant   259 NYLGYDIYDL---ELTEVHSNSELRKL-----LMKTSSKSIIVIEDIDCSINLTNRKKNSSNVSS 315

  Fly   411 KRT------------------------NSVLHPYANQTINQLLSEMDGFHQNAGV--IVLGATNR 449
            :|:                        |::       |::.||:..||.....|.  |.:..||.
plant   316 QRSYYDAETRNGSGSGSGGSGEEGGNGNTI-------TLSGLLNFTDGLWSCCGSERIFVFTTNH 373

  Fly   450 RDDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKILHDEIDLDMLARGTSGFTGADLENMI 514
            .:.||.||||.||.|:.:.:|..:|...|.:|..||...:.| |:.|:|         .::|.::
plant   374 IEKLDPALLRSGRMDMHIYMSFCNFPSLKILLKNYLGYGVED-INGDVL---------KEMEMVV 428

  Fly   515 NQAALRAAIDGAETVSMKHLETARDK 540
            .:|.:..|     .||...::..|||
plant   429 EKAEMTPA-----DVSEALIKNRRDK 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 HflB 258..737 CDD:440233 77/340 (23%)
AT5G57480NP_200556.1 AAA_assoc 26..119 CDD:464152
P-loop containing Nucleoside Triphosphate Hydrolases 159..>261 CDD:476819 26/103 (25%)
RecA-like_BCS1 215..393 CDD:410918 44/192 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.