DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and RPT6A

DIOPT Version :10

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_568389.1 Gene:RPT6A / 832121 AraportID:AT5G19990 Length:419 Species:Arabidopsis thaliana


Alignment Length:401 Identity:135/401 - (33%)
Similarity:202/401 - (50%) Gaps:57/401 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 QQQLNQIRGFKTDRSIEAEQKRNPTMTSRLKNALANSPQRLDGDTPLQAEKLRRLLAKSEEHGFN 223
            |:||.|    ||:.....|.:|| .:.||::                   .||..|...:|.|..
plant    44 QRQLRQ----KTNNLNRLEAQRN-ELNSRVR-------------------MLREELQLLQEPGSY 84

  Fly   224 KAESLKIAFAEGYLAAANSEDSPKSGKTMKYLKTLQTIVVIVVFLGIFLSFFTTSNGSVFRS--- 285
            ..|.:|:......|...:.|.        ||        |:.:...|.::..|.|.....|:   
plant    85 VGEVVKVMGKNKVLVKVHPEG--------KY--------VVDIDKSIDITKITPSTRVALRNDSY 133

  Fly   286 -IQLGNQVEVDP-------EEI-NVTFEDVKGCDEAKQELKEVVEF-LKSPEKFSNLGGKLPKGV 340
             :.|....:|||       |:: :.|::.:.|.|:..:|:|||:|. :|.||.|.:||...||||
plant   134 VLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGV 198

  Fly   341 LLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEI 405
            ||.|||||||||||||||......|...:|.|..:..:|:|:|.||:||..|:..||.:||:|||
plant   199 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 263

  Fly   406 DSVGAKRTNSVL---HPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEV 467
            ||:|:.|..|..   .....:|:.:||:::|||..:..:.||.||||.|.||||||||||.|.::
plant   264 DSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKI 328

  Fly   468 MVSTPDFTGRKEILSLYLTKI-LHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSM 531
            ....|:...|.:||.::..|: |...|||..:|...:|.:||:|:.:..:|.:.|..:....|:.
plant   329 EFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQ 393

  Fly   532 KHLETARDKVL 542
            :..|.|..||:
plant   394 EDFEMAVAKVM 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 HflB 258..737 CDD:440233 113/302 (37%)
RPT6ANP_568389.1 PRK03992 36..413 CDD:179699 135/401 (34%)

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