DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and AT5G17750

DIOPT Version :10

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_197277.1 Gene:AT5G17750 / 831643 AraportID:AT5G17750 Length:392 Species:Arabidopsis thaliana


Alignment Length:211 Identity:59/211 - (27%)
Similarity:98/211 - (46%) Gaps:34/211 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 TFEDVKGCDEAKQELKEVVE-FLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEAKVPF 365
            ||..:....:.|..:.|.:: |:|..:.:..:|....:...|.|||||||:.|..|:|...|...
plant   184 TFHTMAMTPKLKSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMANYLKFDI 248

  Fly   366 FHAAGPEFDEVLVG-QGARRVRDLFKAAKARAPCVIFIDEID--------------SVGAKRTNS 415
                   :|..|.. ||..::|.|..|....:  ::.:::||              ::||.:.::
plant   249 -------YDLQLANVQGDAQLRSLLLATNNSS--ILLVEDIDCSVDLPTRLQPATTTLGAPKGST 304

  Fly   416 VLHPYANQTINQLLSEMDGFHQNAG--VIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRK 478
            .|      |::.||:.:||...:.|  .||:..||.::.||.||||||..|:.:.:....|.|.|
plant   305 PL------TLSGLLNCIDGLWSSCGDERIVIFTTNNKEVLDPALLRPGCMDMHIYLGHCSFEGFK 363

  Fly   479 EILSLYLTKILHDEID 494
            .:.|.|| .:.||..|
plant   364 ILASNYL-GMPHDSDD 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 HflB 258..737 CDD:440233 59/211 (28%)
AT5G17750NP_197277.1 AAA_assoc 35..103 CDD:464152
PRK08939 <145..>245 CDD:236353 18/60 (30%)
RecA-like_BCS1 198..354 CDD:410918 47/170 (28%)
Blue background indicates that the domain is not in the aligned region.

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