DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and AT3G50940

DIOPT Version :10

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_190663.2 Gene:AT3G50940 / 824258 AraportID:AT3G50940 Length:451 Species:Arabidopsis thaliana


Alignment Length:384 Identity:95/384 - (24%)
Similarity:149/384 - (38%) Gaps:90/384 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 RSIEAEQKRNPTMTSRLKNALANSPQRLDGDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFAEGY 236
            |.::.:..|||.                |.::.|::|      .:|.|..|.|  ..|....|.|
plant   131 RHVDKKDFRNPR----------------DLNSTLKSE------VRSYELSFRK--KFKNMVLESY 171

  Fly   237 LAAANSEDSPKSGKTMKYLKTLQTIVVIVVFLGIFLSFFTTSNGSVFRSIQLGNQVEVDPEEINV 301
            |.....:    :....:..|||:  :..|....:..:..|..:.|.||::.|      |||    
plant   172 LPFVVEQ----AASIKQKFKTLK--IFTVDSYSVEWTSVTLDHPSTFRTLAL------DPE---- 220

  Fly   302 TFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEAKVPFF 366
                ||     |..::::..|::....:..:|....:|.||.|||||||:.|..|:|.......:
plant   221 ----VK-----KNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFDIY 276

  Fly   367 HAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEID-SVGAK------RTNSVLHPYANQT 424
                 :.|...:...|...|.|...|..   .::.:::|| |:..|      ..|..||  ...|
plant   277 -----DLDLTSLNNNAELRRLLMSTANR---SILVVEDIDCSIELKDRSTDQENNDPLH--KTVT 331

  Fly   425 INQLLSEMDGFHQNAG--VIVLGATNRRDDLDQALLRPGRFDVEVMVS--TPDFTGRKEILSLYL 485
            ::.||:.:||...:.|  .|::..||.|:.||.|||||||.|:.:.:|  ||  ...|.:.|.||
plant   332 LSGLLNFVDGLWSSCGNERIIVFTTNYREKLDPALLRPGRMDMHIHMSYCTP--AAFKVLASNYL 394

  Fly   486 TKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMG 544
            .  :.|.|                |...|.:......:..||.........:.||||.|
plant   395 E--IQDHI----------------LFEQIEEFIREIEVTPAEVAEQLMRSDSVDKVLQG 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 HflB 258..737 CDD:440233 78/298 (26%)
AT3G50940NP_190663.2 AAA_assoc 38..130 CDD:464152
RecA-like_BCS1 225..378 CDD:410918 47/162 (29%)
Blue background indicates that the domain is not in the aligned region.

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