DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and yme1l1a

DIOPT Version :9

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_005162918.1 Gene:yme1l1a / 793098 ZFINID:ZDB-GENE-091113-41 Length:729 Species:Danio rerio


Alignment Length:790 Identity:351/790 - (44%)
Similarity:463/790 - (58%) Gaps:124/790 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFSTTTH-----SVPYLYLGNFSRKPHYYSVNRTKLHGSAGAARLSKSTSTS---SRSHDLV--- 54
            |||..|.     :||..:|.|..:          .|..||.:|..:...|..   |..||.:   
Zfish     1 MFSLPTSFQSQGTVPLTHLINVVQ----------YLKSSANSAVTASVQSLQKDLSPEHDPLHYE 55

  Fly    55 --LDLRNLLSRSSASIQGMVE-RAARLNGILDRRLVDDVLAKVTSMLPSMRDVR-----VTLEES 111
              ::|:.|         |:.| |.:.:..:|:|            :|||.....     |....:
Zfish    56 PKVNLKEL---------GLSELRVSHVRDVLER------------LLPSTHPAEKSFASVAQNST 99

  Fly   112 ATQIGRVQ----LQN-YQFEVSLTGAAGSVPTGANVKVIPTITPGLLRPLFSQ-------QQLNQ 164
            |.:...:.    .|| |.|....:|..||          .....|...||.:.       |...|
Zfish   100 AWRTSHISAPSFFQNKYGFSHKHSGCFGS----------SVFRRGGSSPLQAACVDLHHLQLWVQ 154

  Fly   165 IRGFKTDRSIEAEQKRNPTMTSRLKNALANSPQRLDGDTP------LQAEK-----LRRLLAKS- 217
            .|||||            ...||...:.:..|...|..||      :..||     |.:||.:: 
Zfish   155 NRGFKT------------MSKSRHLRSSSEGPVEADNYTPVFMKGLMMKEKTDTGSLEQLLKQNN 207

  Fly   218 --EEHGFNKAESLKIAFAEGYLAAANSEDSPKSGKTMKYLKTLQTIVVIVVFLGIF---LSFFTT 277
              |.|    .::.|..|.||::.|     ...:.:|...:|..:.|:.:::..||:   .|.|.:
Zfish   208 LPESH----QDAFKTGFTEGFMKA-----QALTKRTQDSVKRTRLIIFVLLLAGIYGVSRSPFFS 263

  Fly   278 SNGSVFRSIQL----GNQVEVDPEEI-NVTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLP 337
            ..||...:::.    |....|||.:: |:|||.|||.:|||.||::|||||::|:||:.||||||
Zfish   264 GKGSFSDTVRFRTTSGLDSSVDPVQMKNITFEHVKGVEEAKNELQDVVEFLRNPQKFTVLGGKLP 328

  Fly   338 KGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFI 402
            ||:|||||||||||||||||||||.|||::|:|.||||:.||.||.|:|:|||.|||.|||||||
Zfish   329 KGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFKEAKASAPCVIFI 393

  Fly   403 DEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEV 467
            ||:||||.||..|.:|||:.|||||||:|||||..|.||||:||||..:.||.||:||||||::|
Zfish   394 DELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIVIGATNFAEALDNALVRPGRFDMQV 458

  Fly   468 MVSTPDFTGRKEILSLYLTKILHDE-IDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSM 531
            .|..||..||.|||..||.||..|. ||.:::||||.||:||:|||::|||||:||.||.:.|:|
Zfish   459 TVPIPDVKGRTEILEWYLKKIKVDSAIDAEIIARGTVGFSGAELENLVNQAALKAAADGKDLVTM 523

  Fly   532 KHLETARDKVLMGPERKARLPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTA 596
            |.|:.|:||:||||||::...|:...|||||||.||||||:|||::.|::|.|||||||||||.:
Zfish   524 KELKFAKDKILMGPERRSVEIDKRNKTITAYHESGHAIVAYYTKDAMPINKATIMPRGPSLGHVS 588

  Fly   597 YIPEKERYHVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVRDWGMSDK 661
            .:||.:|:..|:|||||.||..||||.|||||||.|:||||||||...||.||..||..:|||||
Zfish   589 LLPENDRWSETRAQLLAQMDVSMGGRVAEELVFGNDQITSGASSDFDGATKIAQMMVTRFGMSDK 653

  Fly   662 VGLRTI-EASKGLGTGDTLGPNTIEAVDAEIKRILSDSYERAKAILRKHTREHKALAEALLKYET 725
            :|:.|. :.:|.       .|.|..||:.||:.:|..||||||.||:.:::|||.||:|||.|||
Zfish   654 LGVMTYSDLTKH-------SPETRAAVEQEIRVLLQSSYERAKKILKTYSKEHKLLADALLTYET 711

  Fly   726 LDADDIKAIL 735
            |:|.:|:.||
Zfish   712 LNAKEIQMIL 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 FtsH_fam 254..736 CDD:273520 287/492 (58%)
yme1l1aXP_005162918.1 P-loop_NTPase 287..>351 CDD:304359 46/63 (73%)
FtsH_fam 289..722 CDD:273520 275/440 (63%)
AAA 331..461 CDD:278434 93/129 (72%)
Peptidase_M41 542..720 CDD:279742 104/184 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578447
Domainoid 1 1.000 198 1.000 Domainoid score I3035
eggNOG 1 0.900 - - E1_COG0465
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 550 1.000 Inparanoid score I1104
OMA 1 1.010 - - QHG53805
OrthoDB 1 1.010 - - D217929at2759
OrthoFinder 1 1.000 - - FOG0003122
OrthoInspector 1 1.000 - - otm26273
orthoMCL 1 0.900 - - OOG6_101196
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1955
SonicParanoid 1 1.000 - - X2093
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.700

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