DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and afg3l1

DIOPT Version :10

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_005163264.1 Gene:afg3l1 / 570430 ZFINID:ZDB-GENE-121214-51 Length:751 Species:Danio rerio


Alignment Length:451 Identity:198/451 - (43%)
Similarity:281/451 - (62%) Gaps:18/451 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   297 EEINVTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361
            :.|.|.|:||.||:|||.|:.|.|.|||:|:::.:||.|:|||.:|.|||||||||||:|.||||
Zfish   253 DSIEVKFKDVAGCEEAKVEIMEFVNFLKNPQQYQDLGAKIPKGAVLSGPPGTGKTLLAKATAGEA 317

  Fly   362 KVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYANQ--T 424
            .|||....|.||.|:.||.|..||||:|..|:..|||::||||||:||.||........:.|  |
Zfish   318 NVPFITVNGSEFLEMFVGVGPARVRDMFALARKNAPCILFIDEIDAVGKKRGGGNFGGNSEQENT 382

  Fly   425 INQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKI- 488
            :||||.|||||:.:..|:||..|||.|.||.||:||||||.::.:..||..||..|..::|..: 
Zfish   383 LNQLLVEMDGFNSSTNVVVLAGTNRPDVLDPALMRPGRFDRQIYLGPPDIKGRASIFKVHLRPLK 447

  Fly   489 LHDEIDLDMLAR----GTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMGPERKA 549
            |...:|.|.:||    .|.||||||:.|:.|:|||.||....|:||:||.|.|.|:|:.|.|:|.
Zfish   448 LDPSVDRDAIARKMAAATPGFTGADIANVCNEAALIAARYLNESVSVKHFEQAIDRVIGGLEKKT 512

  Fly   550 RLPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTAYIPEKERYHVTKAQLLAM 614
            ::.........||||.|||:|.::.:.:.||.||:|:|||..||:..|:| ||:|..|:.||...
Zfish   513 QVLQPTEKKTVAYHEAGHAVVGWFLQHADPLLKVSIIPRGKGLGYAQYLP-KEQYLYTREQLFDR 576

  Fly   615 MDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVRDWGMSDKVGLRTIEASKGLGTGDTL 679
            |..|:|||.||::.|  :|||:||..|||:.|..|...:..:|||::||..:.:..:   .|:|:
Zfish   577 MCMMLGGRVAEQVFF--NKITTGAHDDLKKVTQSAYAQIVQFGMSERVGQVSFDLPR---QGETV 636

  Fly   680 -----GPNTIEAVDAEIKRILSDSYERAKAILRKHTREHKALAEALLKYETLDADDIKAIL 735
                 ...|.|.:|.|::.::..:|.|...::.:...:...:.:.||:.|.||..|:..:|
Zfish   637 LEKPYSEATAELIDEEVRDLVDRAYRRTLELVTEKREQVDMVGKRLLEKEVLDKADMLELL 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 HflB 258..737 CDD:440233 198/451 (44%)
afg3l1XP_005163264.1 HflB 107..699 CDD:440233 198/451 (44%)

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