DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and afg3l1p

DIOPT Version :9

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001015906.1 Gene:afg3l1p / 548660 XenbaseID:XB-GENE-1014910 Length:778 Species:Xenopus tropicalis


Alignment Length:651 Identity:226/651 - (34%)
Similarity:334/651 - (51%) Gaps:123/651 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 IGRVQLQNYQFEVSLTGAAGSVPTGANVKVIPTITPGLLRPLFSQQQLNQIRGFKTDRSIEAEQK 179
            :.|:::.|.||                |:|||  |.|.....:....:..:..|          :
 Frog   170 VDRLEVVNKQF----------------VRVIP--TAGTTSEKYVWFNIGSVDSF----------E 206

  Fly   180 RNPTMTSRLKNALANSPQRLDGDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFAEGYLAAANSED 244
            ||      |:||                         .:|.|...|:.:.:.:         |.:
 Frog   207 RN------LENA-------------------------QDELGIEPAQRVSVIY---------SSE 231

  Fly   245 SPKSGKTMKYLKTLQTIVVIVVFL------------------GIFLSFFTTSNGSVFRSIQLGNQ 291
            |..|     :|.:|...:::|.||                  |:|      ..|.....:..|| 
 Frog   232 SDGS-----FLMSLIPTLLLVGFLLFSLRRGAMGPGRGGRGGGLF------GVGETTAKMLKGN- 284

  Fly   292 VEVDPEEINVTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARA 356
                   |:|.|:||.||:|||.|:.|.|.|||:|:::.:||.|:|:|.:|.|||||||||||:|
 Frog   285 -------IDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPRGAMLTGPPGTGKTLLAKA 342

  Fly   357 VAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYA 421
            .||||.|||....|.||.|:.||.|..||||:|..|:..|||::||||||:||.||........:
 Frog   343 TAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKNAPCILFIDEIDAVGRKRGRGNFGGQS 407

  Fly   422 NQ--TINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLY 484
            .|  |:||||.|||||:.:..|::|..|||.|.||.||:||||||.::.:..||..||..|..::
 Frog   408 EQENTLNQLLVEMDGFNSSTNVVILAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVH 472

  Fly   485 LTKILHDE-IDLDMLARG----TSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMG 544
            |..:..|| :..:.|:|.    |.||||||:.|:.|:|||.||....:.|..||...|.::|:.|
 Frog   473 LRPLKLDESVSKEALSRKLAALTPGFTGADIANVCNEAALIAARYLKDYVVEKHFVQAIERVIGG 537

  Fly   545 PERKARLPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTAYIPEKERYHVTKA 609
            .|:|.::...|.....||||.|||:|.:|.:.:.||.||:|:|||..||:..|:| ||:|..|:.
 Frog   538 LEKKTQVLQPEEKKTVAYHEAGHAVVGWYLQHADPLLKVSIIPRGKGLGYAQYLP-KEQYLYTRE 601

  Fly   610 QLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVRDWGMSDKVGLRTIEASKGLG 674
            ||...|..|:|||.:|:|.|  .:||:||..|||:.|..|...:..:|||:|:|..:.:..:   
 Frog   602 QLFDRMCMMLGGRVSEQLFF--SRITTGAQDDLKKVTQSAYAQIVQFGMSEKLGQVSFDLPR--- 661

  Fly   675 TGDTLGPN-----TIEAVDAEIKRILSDSYERAKAILRKHTREHKALAEALLKYETLDADDIKAI 734
            .|:.|...     |.|.:|.|.:.:::.:|||...:|.:...:.:.:|:.||:.|.|:..|:..:
 Frog   662 QGEMLAEKPYSEATAELIDQEARNLINSAYERTLELLTRCKDQVEKVAKRLLEKEVLEKSDMIEL 726

  Fly   735 L 735
            |
 Frog   727 L 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 FtsH_fam 254..736 CDD:273520 204/512 (40%)
afg3l1pNP_001015906.1 FtsH_ext 133..223 CDD:377663 19/111 (17%)
FtsH_fam 236..728 CDD:273520 204/512 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D217929at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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