DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and Rpt3R

DIOPT Version :10

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster


Alignment Length:413 Identity:121/413 - (29%)
Similarity:193/413 - (46%) Gaps:94/413 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 LKNALA----NSPQRLDGDTP---------LQAEKLRRLLAKSEEHGFNKAESLKIAFAEGYLAA 239
            ||..:|    .|.::.||..|         ||.|  ..|:...|::...:..:||..|..     
  Fly     4 LKEEIAQFHEQSLEKYDGLDPHDLYVLYKKLQME--LELIQVQEDYIKEEQRNLKKEFIH----- 61

  Fly   240 ANSEDSPKSGKTMKYLKTLQTIVVIVVFLGIFLSFFTTSNGSV---------------------- 282
            |..|           :|.::.:.:::   |.||.....:||.|                      
  Fly    62 AQEE-----------VKRIKAVPLVI---GQFLEAVDENNGIVASTTGSNYYVRVLSTIDREQLK 112

  Fly   283 -FRSIQLGNQ----VEVDP-------------EEINVTFEDVKGCDEAKQELKEVVEF-LKSPEK 328
             ..|:.|..|    |::.|             |:.::::.|:.|.|..|||::|.||. |...:.
  Fly   113 PSSSVGLHKQSNCLVDLVPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQL 177

  Fly   329 FSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAK 393
            :..:|...|:||||.||||.|||:||:|||......|....|.||.:..:|:|.|.|||||:.||
  Fly   178 YKQIGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAK 242

  Fly   394 ARAPCVIFIDEIDSVGAKRTNSVLHPYANQT---------INQLLSEMDGFHQNAGVIVLGATNR 449
            ..:|.:|||||||::..||.::       ||         :.:||::||||.:...:.|:.||||
  Fly   243 QNSPSIIFIDEIDAIATKRFDA-------QTGADREVQRILLELLNQMDGFDETTNIKVIMATNR 300

  Fly   450 RDDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKI-LHDEIDL-DMLARGTSGFTGADLEN 512
            .|.||.|||||||.|.::.:..||...::.:.:...:|: :.:::|| |::|| ....:.||:..
  Fly   301 ADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIAR-PDKISNADINA 364

  Fly   513 MINQAALRAAIDGAETVSMKHLE 535
            :..:|.:.|..:....|:.|..|
  Fly   365 ICQEAGMHAVRENRYVVNAKDFE 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 HflB 258..737 CDD:440233 103/330 (31%)
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 117/397 (29%)

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