DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and Bcs1l

DIOPT Version :9

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001007667.1 Gene:Bcs1l / 301514 RGDID:1359658 Length:418 Species:Rattus norvegicus


Alignment Length:165 Identity:47/165 - (28%)
Similarity:80/165 - (48%) Gaps:16/165 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 AKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEAK--VPFFHAAGPEFD 374
            |.:.:|::.||:.:|:.:.:.|....:|.||.||||.||:....|:|||.:  :...........
  Rat   198 ADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLS 262

  Fly   375 EVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYANQ-----TINQLLSEMDG 434
            :       .|:..|...|..::  ::.::::|:....|..:|.:|...|     |.:.||:.:||
  Rat   263 D-------DRLNHLLSVAPQQS--LVLLEDVDAAFLSRDLAVENPVKYQGLGRLTFSGLLNALDG 318

  Fly   435 FHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMV 469
            .......||...||..|.||.||:||||.|::..|
  Rat   319 VASTEARIVFMTTNHIDRLDPALIRPGRVDLKEYV 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 FtsH_fam 254..736 CDD:273520 47/165 (28%)
Bcs1lNP_001007667.1 BCS1_N 24..191 CDD:214980
RecA-like_BCS1 201..353 CDD:410918 45/160 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0465
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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