DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and F56F11.4

DIOPT Version :10

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001367906.1 Gene:F56F11.4 / 175403 WormBaseID:WBGene00018991 Length:432 Species:Caenorhabditis elegans


Alignment Length:435 Identity:137/435 - (31%)
Similarity:207/435 - (47%) Gaps:54/435 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 GSVPTGANVKVIPTITPG----LLRPLFSQQQLNQIRGFKTDRSIEAEQKRNPTMTSRLKNALAN 194
            |..|...|.:...|:...    .|||.| :.::.|......::||...:             |..
 Worm    23 GPAPVFPNSRKPATLDANSDEQTLRPYF-KTKVEQAEQTVAEKSINVRR-------------LMA 73

  Fly   195 SPQRLDGDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFAEGYLAAANSEDSPKSGKTMKYLKTLQ 259
            ..:.|:|...|..|::..|    .|.|.:..|..| |..:..:...|..|.       ||     
 Worm    74 QQKELNGKVRLLKEEISHL----HEQGSHVGEVCK-AMDKKKVLVKNHPDG-------KY----- 121

  Fly   260 TIVVIVVFLGIFLSFFTTSNGSVFRSIQLG-NQV---EVDP-------EEI-NVTFEDVKGCDEA 312
               ::.|...:.:|..........|:.... ::|   :|||       |:: :.|:|.|.|.|..
 Worm   122 ---IVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQ 183

  Fly   313 KQELKEVVEF-LKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV 376
            .:|:|||:|. :|.||.|..||...||||||.|||||||||||||||...:..|...:|.|..:.
 Worm   184 IKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 248

  Fly   377 LVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVL--HPYANQTINQLLSEMDGFHQNA 439
            .:|:|||.||:||..|:..||.:||:|||||:|:.|.....  .....:|:.:||:::|||....
 Worm   249 FIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATK 313

  Fly   440 GVIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKI-LHDEIDLDMLARGTS 503
            .:.|:.||||.|.||.|||||||.|.::....||...|.:||.::..|: |...|.:|.:|....
 Worm   314 NIKVIMATNRIDILDSALLRPGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIP 378

  Fly   504 GFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMGPERK 548
            |.:||:::::..:|.:.|..:....|:.:..|.|..||:.....|
 Worm   379 GASGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVMQKDSEK 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 HflB 258..737 CDD:440233 111/307 (36%)
F56F11.4NP_001367906.1 PRK03992 41..426 CDD:179699 133/417 (32%)

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