DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and Yme1l1

DIOPT Version :9

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_446134.2 Gene:Yme1l1 / 114217 RGDID:620764 Length:715 Species:Rattus norvegicus


Alignment Length:778 Identity:356/778 - (45%)
Similarity:475/778 - (61%) Gaps:114/778 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFSTTTH-----SVPYLYLGNFSRKPHYYSVNRTKLHGSAGAARLSKSTSTSSRSH--------- 51
            |||.::.     :||..:|.|....|...||              |.:||.|.:.|         
  Rat     1 MFSLSSTVQPQVTVPLSHLINAFHSPKNISV--------------SVNTSASPKQHRDTVAEHEA 51

  Fly    52 ---DLVLDLRNLLSRSSASIQGMVERAARLNGILDRRLVDDVLAKVTSMLPSM-RDVRVTLEESA 112
               :.||:||:|         |:.|...   |..|:        .|.::||.. :|.||:   |.
  Rat    52 PSSEPVLNLRDL---------GLSELKI---GQTDK--------LVENLLPGFYKDKRVS---SC 93

  Fly   113 TQIGRVQLQNY------QFEVSLTGAAGSVPTGANVKVIPTITPGLLR-PLFSQQQLNQIRGFKT 170
            .....:..|::      ..::..|..:.|: ...:.|.:.:|...|.. |:|.|.     |||||
  Rat    94 WHTSHISAQSFFENKYGHLDMFSTLRSSSL-YRQHPKTLQSICSDLQNFPVFIQS-----RGFKT 152

  Fly   171 DRSIEAEQKRNPTMTSRLKNALANSPQRLDG----DTPLQAEKLRRLLAKS---EEHGFNKAESL 228
               :::..:|..:.:.||..|...:|..:.|    |.....|.|.:|:...   |.|    .::.
  Rat   153 ---LKSRTRRLQSTSERLAEAQNIAPSFVKGFLLRDRGTDLESLDKLMKTKNIPEVH----QDAF 210

  Fly   229 KIAFAEGYLAAANSEDSPKSGKTMKYLKTLQTIVVIVVFLGI-------FLS--FFTTSNGSVFR 284
            |..||||:|.|     ...:.||...|:..:.|:.:::..||       |||  |.||:      
  Rat   211 KTGFAEGFLKA-----QALTQKTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTT------ 264

  Fly   285 SIQLGNQVEVDPEEI-NVTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGT 348
                |....|||.:: |||||.|||.:||||||:|||||||:|:||:.||||||||:||||||||
  Rat   265 ----GLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGT 325

  Fly   349 GKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRT 413
            |||||||||||||.|||::|:|.||||:.||.||.|:|:||:.|||.|||||||||:||||.||.
  Rat   326 GKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRI 390

  Fly   414 NSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRK 478
            .|.:|||:.|||||||:|||||..|.|||::||||..:.||.||:||||||::|.|..||..||.
  Rat   391 ESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 455

  Fly   479 EILSLYLTKILHDE-IDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVL 542
            |||..||.||..|: :|.:::||||.||:||:|||::|||||:||:||.|.|:||.||.::||:|
  Rat   456 EILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKIL 520

  Fly   543 MGPERKARLPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTAYIPEKERYHVT 607
            |||||::...|.:..|||||||.||||:|:|||::.|::|.|||||||:|||.:.:||.:|::.|
  Rat   521 MGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNET 585

  Fly   608 KAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVRDWGMSDKVGLRTIEASKG 672
            :|||||.||..||||.||||:||||.||:|||||...||.||..||..:|||:|:|:.|..    
  Rat   586 RAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYS---- 646

  Fly   673 LGTGDTLGPNTIEAVDAEIKRILSDSYERAKAILRKHTREHKALAEALLKYETLDADDIKAIL 735
             .|| .|.|.|..|::.||:.:|.:||||||.||:.|.:|||.||||||.||||||.:|:.:|
  Rat   647 -DTG-KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 FtsH_fam 254..736 CDD:273520 290/493 (59%)
Yme1l1NP_446134.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..54 6/36 (17%)
P-loop_NTPase 273..>337 CDD:304359 50/63 (79%)
FtsH_fam 275..708 CDD:273520 276/439 (63%)
AAA 317..448 CDD:278434 92/130 (71%)
Peptidase_M41 528..706 CDD:279742 104/183 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338836
Domainoid 1 1.000 203 1.000 Domainoid score I2873
eggNOG 1 0.900 - - E1_COG0465
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H31996
Inparanoid 1 1.050 562 1.000 Inparanoid score I1048
OMA 1 1.010 - - QHG53805
OrthoDB 1 1.010 - - D217929at2759
OrthoFinder 1 1.000 - - FOG0003122
OrthoInspector 1 1.000 - - oto97086
orthoMCL 1 0.900 - - OOG6_101196
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2093
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.670

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