DRSC/TRiP Functional Genomics Resources

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Protein Alignment YME1L and spg7

DIOPT Version :9

Sequence 1:NP_001246473.1 Gene:YME1L / 37636 FlyBaseID:FBgn0034792 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_002933705.2 Gene:spg7 / 100485977 XenbaseID:XB-GENE-6034036 Length:768 Species:Xenopus tropicalis


Alignment Length:779 Identity:246/779 - (31%)
Similarity:381/779 - (48%) Gaps:149/779 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 GSAGAAR-LSKSTSTSSRSHDLVLDLRNLLSRS-SASIQGMVERAARLNGILDRRLVDD------ 89
            ||||..| :.::..:.||.      |:|||.|: :....||.|.      ::.|.|:.|      
 Frog    14 GSAGCWRKVPRAECSESRI------LQNLLCRNLTPGSHGMREY------LIKRHLIQDPLRIWR 66

  Fly    90 VLAKVTSMLPSMRDVRVTLEESA------------------TQIGRVQLQNYQFEV--------S 128
            :|..:.....|.|..:....|.:                  .|:.|.:|:.. |.:        |
 Frog    67 ILGGINYFSTSGRGNKENQNEGSKGKTPHEDEEEKKRREREDQMYRERLRTL-FIIAVIMSLLNS 130

  Fly   129 LTGAAGSVPTG------------ANVKVIPT-------ITPGLL---RP---LFSQQQLNQIRGF 168
            |:.:.|::...            ..|:|:|.       :.||.:   ||   |..:.|:..|..|
 Frog   131 LSSSGGNISWNDFVNEMLAKGEVMRVQVVPESDIVEIYLYPGAVVFGRPRLALMYRMQVANIDKF 195

  Fly   169 KTDRSIEAEQKRNPTMTSRLKNALANSPQRLDGDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFA 233
            :                                      ||||   |..||...|..:.:.:::.
 Frog   196 E--------------------------------------EKLR---AAEEELKINVKDRIPVSYK 219

  Fly   234 E-GYLAAANSEDSPKSGKTMKYLKTLQTIVVIVVFLGIFLSFFTTSNG--SVFRSIQLGNQVEVD 295
            . |:...|            .|...:..:.|.:::....|:......|  |.|..:::.....||
 Frog   220 RTGFFGNA------------LYALGMAAVGVAILWYIFRLAGMAGREGAFSAFNQLKMARFTIVD 272

  Fly   296 PEE-INVTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAG 359
            .:. ..::|:||.|..|||.|:||.|::||||:::..||.|:|||.||:||||.||||||:|||.
 Frog   273 GKSGKGISFKDVAGMHEAKLEVKEFVDYLKSPDRYLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 337

  Fly   360 EAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKRTNSVLHPYAN-- 422
            ||:|||...||.||.||:.|.||.|||.|||.|:.||||:::|||||:||.||:.: :..::|  
 Frog   338 EAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARTRAPCIVYIDEIDAVGKKRSTN-MSSFSNTE 401

  Fly   423 --QTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMVSTPDFTGRKEIL---- 481
              ||:||||.||||......||||.:|||.|.||.||:||||.|..:.:..|....|:||.    
 Frog   402 EEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDNALMRPGRLDRHIFIDLPTLQERREIFEQHL 466

  Fly   482 -SLYLTKILHDEIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMGP 545
             ||.||:  ........||..|.||:|||:.|:.|:|||.||.:|.:::...:.|.|.::|:.|.
 Frog   467 KSLKLTQ--PGSFYSQRLAELTPGFSGADIANICNEAALHAAREGYQSIDTFNFEYAVERVIAGT 529

  Fly   546 ERKARLPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPR-GPSLGHTAYIPEKERYHVTKA 609
            .:|:::..:|...:.|:||.|||:|.:..:.:..:.||:|.|| ..:||....:| :|:|..||.
 Frog   530 AKKSKIMSKEERRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFAQILP-REQYLYTKE 593

  Fly   610 QLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVRDWGMSDKVGLRTI---EASK 671
            |||..|...:|||.:|.:.|  :|:|:||..||::.|.||..||:.:||...:|..:.   |::.
 Frog   594 QLLERMCMALGGRVSEAITF--NKVTTGAQDDLRKVTRIAYAMVKQYGMVPSIGQVSFPDSESTP 656

  Fly   672 GLGTGDTLGPNTIEAVDAEIKRILSDSYERAKAILRKHTREHKALAEALLKYETLDADDIKAIL 735
            |:|. ........|.:|.|.:.::|.:|.|.:.:|..:..:...|..|||:.|.::.|||:.::
 Frog   657 GIGR-RPFSQGLQEMMDREAQLLVSTAYRRTEKLLLDNRDKLILLTNALLEREVINYDDIEHLI 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YME1LNP_001246473.1 FtsH_fam 254..736 CDD:273520 196/498 (39%)
spg7XP_002933705.2 FtsH_ext 118..215 CDD:377663 23/138 (17%)
FtsH_fam 239..720 CDD:273520 194/488 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D217929at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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