DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fd59A and foxa1

DIOPT Version :9

Sequence 1:NP_523814.1 Gene:fd59A / 37631 FlyBaseID:FBgn0004896 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_571359.2 Gene:foxa1 / 30541 ZFINID:ZDB-GENE-990415-78 Length:427 Species:Danio rerio


Alignment Length:304 Identity:100/304 - (32%)
Similarity:134/304 - (44%) Gaps:93/304 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 HTSTDPMHTLHDSVSLSPPLIKSSR--GGSSIGN---GIGCSAS-SRTAAADAMS-----MGCDD 55
            |.:.|.....:|:..:..|:..||.  |.||:.|   .:|.|.| :.|:::..||     :|   
Zfish    10 HETPDWSSYYNDAQEVYSPMTNSSMNPGLSSMNNMNSYMGMSTSGNMTSSSFNMSYANPALG--- 71

  Fly    56 SDIEPSSMGG---SGAAGGNGDGSGSSGG------------------------------------ 81
            :.:.|.:|.|   .||..|.|.|..|.|.                                    
Zfish    72 AGLSPGTMAGMPTGGAMNGMGGGVSSMGTALSPSNLNAMTAQHSSMNALNPYTSMSPTMSSMTYA 136

  Fly    82 -----------------PLVKPPYSYIALITMAILQSPHKKLTLSGICDFIMSRFPYYKDKFPAW 129
                             |..|||||||:||||||.|:|.|.||||.|..:||..||||:.....|
Zfish   137 QPNLNRARDNKTFRRSYPHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRW 201

  Fly   130 QNSIRHNLSLNDCFIKVPREPGNPGKGNFWTLDPLAEDMFDNGSFLRRRKRY---KRAPTMQR-- 189
            ||||||:||.||||:||.|.|..||||::|||.|.:.:||:||.:|||:||:   |:.|..:|  
Zfish   202 QNSIRHSLSFNDCFVKVSRSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCDKKLPDGKRSE 266

  Fly   190 --------FSFPAVFGTLSPFWIRKPVPLVPVHFNVPNFNGSRE 225
                    ...||...|.|.          |||.:..:...|.:
Zfish   267 GKREQSSGSGSPASDSTSSK----------PVHMDSSSITSSNQ 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fd59ANP_523814.1 Forkhead 85..171 CDD:278670 54/85 (64%)
foxa1NP_571359.2 Forkhead_N 17..156 CDD:254796 26/141 (18%)
FH 157..245 CDD:214627 55/87 (63%)
HNF_C 357..416 CDD:286443
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.